View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669-Insertion-1 (Length: 617)
Name: NF0669-Insertion-1
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669-Insertion-1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 617
Target Start/End: Complemental strand, 3641176 - 3640567
Alignment:
| Q |
8 |
acaacagcagtaggatcataccaccagaatgatacactaacatagtagaacacaagacatcaaaatnnnnnnnnctcaaattttcagctgtctggttttt |
107 |
Q |
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| T |
3641176 |
acaacagcagtaggatcataccaccagaatgatacactaacatagtagaacacaagacatcaaaataaaaaaaactcaaattttcagctgtctggttttt |
3641077 |
T |
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| Q |
108 |
caccagcacataatatgattttccatgaaacggccataatttgtagcaatagaatggtcaatttgtgacattctgtcatgatttaacaataaatccagaa |
207 |
Q |
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| T |
3641076 |
caccagcacataatatgattttccatgaaacggccataatttgtagcaatagaatggtcaatttgtgacattctgtcatgatttaacaataaatccagaa |
3640977 |
T |
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| Q |
208 |
caaaaaagataatttcttgaatatcattgccatcaagtctagttctatatgttgaatatacaattatacattatgcttttgtcatcaaattgcactgctt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3640976 |
caaaaaagataatttcttgaatatcattgccatcaagtctagttctatatgttgaatatacaattatgcattatgcttttgtcatcaaattgcactgctt |
3640877 |
T |
|
| Q |
308 |
gctgccaaccgaagcattttattggtttgtacaagaatgaagtaatttacattttaagtctaccataagctgactacagaaatatattgatacatgtaac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3640876 |
gctgccaaccgaagcattttattggtttgtacaagaatgaagtaatttacattttaagtctaccataagctgactacagaaatatattgatacatgtaac |
3640777 |
T |
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| Q |
408 |
tttcaaccttcagagttccattgtagattggtaccactgtagagttacacaacttcttcaatctcctctaagccgcacataaacttgaatccaatctaac |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3640776 |
tttcaaccttcagagttccattgtagattggtaccactgtagagttacacaacttcatcaatctcctctaagccgcacataaacttgaatccaatctaac |
3640677 |
T |
|
| Q |
508 |
ctcaggctcaacccagctcaatccagccaccttcttcaacccagtgcctctcattattttccgaacattattagcatcatcccacctttcagaactagca |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3640676 |
ctcaggctcaacccagctcaatccagccaccttcttcaacccagtgcctctcattattttccgaacattattagcatcatcccacctttcagaactagca |
3640577 |
T |
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| Q |
608 |
taaatattgg |
617 |
Q |
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|||||||||| |
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| T |
3640576 |
taaatattgg |
3640567 |
T |
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