View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669-Insertion-2 (Length: 476)

Name: NF0669-Insertion-2
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669-Insertion-2
NF0669-Insertion-2
[»] chr3 (13 HSPs)
chr3 (77-476)||(1186139-1186553)
chr3 (122-476)||(1204251-1204617)
chr3 (122-476)||(1304473-1304839)
chr3 (161-270)||(480946-481055)
chr3 (161-270)||(778181-778290)
chr3 (161-270)||(476034-476143)
chr3 (8-91)||(1304837-1304925)
chr3 (8-91)||(1204165-1204253)
chr3 (168-252)||(5361030-5361114)
chr3 (168-221)||(45870515-45870568)
chr3 (168-222)||(2996508-2996562)
chr3 (12-40)||(1185858-1185886)
chr3 (175-223)||(20977366-20977414)
[»] scaffold0438 (1 HSPs)
scaffold0438 (131-267)||(5282-5418)
[»] chr5 (2 HSPs)
chr5 (182-267)||(33958061-33958146)
chr5 (157-246)||(28091058-28091147)
[»] chr2 (4 HSPs)
chr2 (168-252)||(43864051-43864135)
chr2 (168-267)||(43875203-43875302)
chr2 (168-246)||(43867548-43867626)
chr2 (161-258)||(38989109-38989206)
[»] chr4 (1 HSPs)
chr4 (173-270)||(52186834-52186931)
[»] chr7 (3 HSPs)
chr7 (168-245)||(6889148-6889225)
chr7 (168-246)||(32413626-32413704)
chr7 (202-245)||(6844163-6844206)
[»] chr6 (7 HSPs)
chr6 (168-246)||(7115544-7115622)
chr6 (168-246)||(7120616-7120694)
chr6 (168-246)||(7124020-7124098)
chr6 (168-232)||(7140748-7140812)
chr6 (168-232)||(8680362-8680426)
chr6 (168-246)||(7175432-7175510)
chr6 (168-246)||(8656649-8656727)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 77 - 476
Target Start/End: Original strand, 1186139 - 1186553
Alignment:
Q  77 agacacaaaggcaaagtaaga---agcagcagcgtagggacgacatcgaaattgaagaagacaggatcagtgaattgagcgaccatcttctccatcacat 173  Q
    |||||| ||||||||||||||   |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  1186139 agacacgaaggcaaagtaagaggcagcagcagcgtagggaagacattgaaattgaagaagacaggatgagtgaattgagcgacaatcttctccatcacat 1186238  T
Q  174 actctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaagactctttccactctcacattaagtgtt 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1186239 actctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactcttacattaagtgtt 1186338  T
Q  274 aatccatttagtaccgaccaaagttttgaacggttcatatctatgttgctgtctcttcgcgatcactcaaccgatatccattct-----------cttgc 362  Q
     |||  |||||||| ||  |||||||||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||||||           ||| |    
T  1186339 gatcattttagtacggaagaaagttttgaacagttcatatctatgttgttgtctcttcgtgatcactcaactgatatccattctctcgttttccacttcc 1186438  T
Q  363 tatgga-agaagagatcaatcataacatatacctaaatattattgaatacgccttttcacacaacatccaacactttcatatcatttacactgctgttaa 461  Q
     |||||   | | | ||| || | || |||||||||| | ||| |||||||||||||| |||||| | ||||||||||| ||| ||||||| ||||||||    
T  1186439 aatggactcatgtgctcagtcgtgacctatacctaaagactatagaatacgccttttcgcacaacgttcaacactttcaaatcctttacaccgctgttaa 1186538  T
Q  462 acaccttccctcctg 476  Q
    |||||||||||||||    
T  1186539 acaccttccctcctg 1186553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 122 - 476
Target Start/End: Original strand, 1204251 - 1204617
Alignment:
Q  122 aaattgaagaagacaggatcagtgaattgagcgaccatcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc 221  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1204251 aaattgaagaagacaggatgagtgaattgagcgacaatcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc 1204350  T
Q  222 caaaagatggatcaatctctggaagactctttccactctcacattaagtgttaatccatttagtaccgaccaaagttttgaacggttcatatctatgttg 321  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||| |||  |||||||| ||  |||||||||||| ||||||||||||||||    
T  1204351 gaaaagatggatcaatctctggaagactctttccactcttacattaagtgttgatcattttagtacggaagaaagttttgaacagttcatatctatgttg 1204450  T
Q  322 ctgtctcttcgcgatcactcaaccgatatccattct-----------cttgctatgga-agaagagatcaatcataacatatacctaaatattattgaat 409  Q
     |||||||||| ||||||||||| ||||||||||||           ||| | |||||   | | | ||| || | || |||||||||| | ||| ||||    
T  1204451 ttgtctcttcgtgatcactcaactgatatccattctctcgttttccacttccaatggactcatgtgctcagtcgtgacctatacctaaagactatagaat 1204550  T
Q  410 acgccttttcacacaacatccaacactttcatatcatttacactgctgttaaacaccttccctcctg 476  Q
    |||||||||| |||||| | ||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  1204551 acgccttttcgcacaacgttcaacactttcaaatcctttacaccgctgttaaacaccttccctcctg 1204617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 122 - 476
Target Start/End: Complemental strand, 1304839 - 1304473
Alignment:
Q  122 aaattgaagaagacaggatcagtgaattgagcgaccatcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc 221  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1304839 aaattgaagaagacaggatgagtgaattgagcgaccatcttctcaatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc 1304740  T
Q  222 caaaagatggatcaatctctggaagactctttccactctcacattaagtgttaatccatttagtaccgaccaaagttttgaacggttcatatctatgttg 321  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||| |||  |||||||| ||  |||||||||||| ||||||||||||||||    
T  1304739 gaaaagatggatcaatctctggaagactctttccactcttacattaagtgttgatcattttagtacggaagaaagttttgaacagttcatatctatgttg 1304640  T
Q  322 ctgtctcttcgcgatcactcaaccgatatccattct-----------cttgctatgga-agaagagatcaatcataacatatacctaaatattattgaat 409  Q
     |||||||||| ||||||||||| ||||||||||||           ||| | |||||   | | | ||| || | || |||||||||| | ||| ||||    
T  1304639 ttgtctcttcgtgatcactcaactgatatccattctctcgttttccacttccaatggactcatgtgctcagtcgtgacctatacctaaagactatagaat 1304540  T
Q  410 acgccttttcacacaacatccaacactttcatatcatttacactgctgttaaacaccttccctcctg 476  Q
    |||||||||| |||||| | ||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  1304539 acgccttttcgcacaacgttcaacactttcaaatcctttacaccgctgttaaacaccttccctcctg 1304473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 480946 - 481055
Alignment:
Q  161 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaagactctttccactct 260  Q
    ||||||||| ||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||    
T  480946 ttctccatctcatactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacgct 481045  T
Q  261 cacattaagt 270  Q
     || ||||||    
T  481046 taccttaagt 481055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 778290 - 778181
Alignment:
Q  161 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaagactctttccactct 260  Q
    |||||| ||||||||| || |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||  |||||||    
T  778290 ttctccttcacatactatcttttttgaaagccaaagaggcagtccaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactct 778191  T
Q  261 cacattaagt 270  Q
     |||||||||    
T  778190 tacattaagt 778181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 476034 - 476143
Alignment:
Q  161 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaagactctttccactct 260  Q
    |||||| ||||| |||||||||||| || |||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||    
T  476034 ttctccttcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatccaaaagatggatcaatctctggaatactcttcccaccct 476133  T
Q  261 cacattaagt 270  Q
     ||| |||||    
T  476134 tacactaagt 476143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 1304925 - 1304837
Alignment:
Q  8 acaaaaccctaaaaatcaatcaaaatgcaattgtctatcctcc-----cttcctccctcagtcaacaatggtggagacacaaaggcaaa 91  Q
    |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||| |||||||||||||||||| ||||||||    
T  1304925 acaaaaccctaaaaatcaatcaaaatgcaattgtctatcctcccttagcttcctccctcaggcaacaatggtggagacacgaaggcaaa 1304837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 1204165 - 1204253
Alignment:
Q  8 acaaaaccctaaaaatcaatcaaaatgcaattgtctatcctcc-----cttcctccctcagtcaacaatggtggagacacaaaggcaaa 91  Q
    |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||| || |||||| |||||||||||||||||    
T  1204165 acaaaaccctaaaaatcaatcaaaatgcaattgtctatcctcccttagcttcctccctcaggcagcaatggaggagacacaaaggcaaa 1204253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 5361114 - 5361030
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaagactctt 252  Q
    |||||| ||||||||||| || | |||| | ||  | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  5361114 tcacatgctctcctttttaaacgtcaaaaaagccatccaaacttgcattttatccaaaagatggaccaatctctggaagactctt 5361030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 45870568 - 45870515
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc 221  Q
    ||||||||| || |||| |||||||||||| ||||||||||||||| |||||||    
T  45870568 tcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatc 45870515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 2996562 - 2996508
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcc 222  Q
    ||||||||| || ||||||||  | ||||| ||||||||||||||||||||||||    
T  2996562 tcacatactttcatttttgaacacaaaagatgcagttcaaacttgcattttatcc 2996508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 1185858 - 1185886
Alignment:
Q  12 aaccctaaaaatcaatcaaaatgcaattg 40  Q
    |||||||||||||||||||||||||||||    
T  1185858 aaccctaaaaatcaatcaaaatgcaattg 1185886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 20977366 - 20977414
Alignment:
Q  175 ctctcctttttgaatgccaaagaggcagttcaaacttgcattttatcca 223  Q
    ||||||||||| |||||| || | || ||||||||||||||||||||||    
T  20977366 ctctcctttttaaatgcccaaaacgccgttcaaacttgcattttatcca 20977414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 131 - 267
Target Start/End: Original strand, 5282 - 5418
Alignment:
Q  131 aagacaggatcagtgaattgagcgaccatcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatg 230  Q
    ||||||||||||||| ||||  ||||  |||||||  ||||||||| |||||||||||  | | |||||| |||||||| ||||||||||||||||||||    
T  5282 aagacaggatcagtgtattggccgactgtcttctcattcacatactgtcctttttgaacacaagagaggccgttcaaacatgcattttatccaaaagatg 5381  T
Q  231 gatcaatctctggaagactctttccactctcacatta 267  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  5382 gatcaatctctggaagactcttcccactcttacatta 5418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 33958146 - 33958061
Alignment:
Q  182 ttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaagactctttccactctcacatta 267  Q
    |||||||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||    
T  33958146 ttttgaacaccagagaggccgttcaaacttgcattttatccaaaagatggatcaatctctggaagactcttcacactcttacatta 33958061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 28091058 - 28091147
Alignment:
Q  157 catcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaag 246  Q
    |||||| ||| ||| || ||||||||||||  ||||||| | || ||||||||||||||| | ||||||||||    |||||||||||||    
T  28091058 catcttatccttcaaattctctcctttttgtttgccaaacaagccgttcaaacttgcattctctccaaaagattcgacaatctctggaag 28091147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 43864135 - 43864051
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaagactctt 252  Q
    ||||||||| |||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  43864135 tcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtctt 43864051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 267
Target Start/End: Complemental strand, 43875302 - 43875203
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaagactctttccactctcacatta 267  Q
    ||||||| | |||||||| ||||| |||||||  ||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||| ||||||    
T  43875302 tcacatagtgtcctttttaaatgcaaaagaggtcgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacatta 43875203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 43867626 - 43867548
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaag 246  Q
    |||| |||| ||||||||||| || |||||||| | ||||||||||||||| |||||||||||||||| ||||||||||    
T  43867626 tcacgtactgtcctttttgaacgcaaaagaggccgctcaaacttgcattttgtccaaaagatggatcactctctggaag 43867548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 258
Target Start/End: Original strand, 38989109 - 38989206
Alignment:
Q  161 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaagactctttccact 258  Q
    |||||| ||||||||| |||||| | || || | | |||| |||||||| ||| |||| |||||||||||||||| ||||||||||| ||||||||||    
T  38989109 ttctccttcacatactgtcctttctaaacgcaatacaggctgttcaaacatgcgttttgtccaaaagatggatcattctctggaagagtctttccact 38989206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 52186834 - 52186931
Alignment:
Q  173 tactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaagactctttccactctcacattaagt 270  Q
    ||||||||||| |||| || ||| |||| |||||||| |||||||| |||||||||||||||| |||||||| || |||| ||||||| ||| |||||    
T  52186834 tactctcctttctgaacgcaaaacaggccgttcaaacctgcattttgtccaaaagatggatcattctctggaggagtcttcccactcttacactaagt 52186931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 6889148 - 6889225
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaa 245  Q
    |||||||||||| |||||| |  ||| ||| || ||||||||||||||| ||||||||||||||| ||||||||||||    
T  6889148 tcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaa 6889225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 32413626 - 32413704
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaag 246  Q
    |||||||||||||| ||||||  ||||| | || ||||||||||||||||| |||| ||||||||  ||||||||||||    
T  32413626 tcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaag 32413704  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 6844163 - 6844206
Alignment:
Q  202 gttcaaacttgcattttatccaaaagatggatcaatctctggaa 245  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||    
T  6844163 gttcaaacttgcattctatccaaaagatggaacaatctttggaa 6844206  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 7115622 - 7115544
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaag 246  Q
    |||||||||||| ||||||||  ||||| | ||||||||||||||  |||| |||||||||||||  ||||||||||||    
T  7115622 tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaag 7115544  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 7120694 - 7120616
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaag 246  Q
    |||||||||||| ||||||||  ||||| | ||||||||||||||  |||| |||||||||||||  ||||||||||||    
T  7120694 tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaag 7120616  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 7124098 - 7124020
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaag 246  Q
    |||||||||||| ||||||||  ||||| | ||||||||||||||  |||| |||||||||||||  ||||||||||||    
T  7124098 tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaag 7124020  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 7140812 - 7140748
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatgga 232  Q
    |||||||||||| ||||||||| | ||| | |||||||||||||| ||||| |||||||||||||    
T  7140812 tcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaagatgga 7140748  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 8680426 - 8680362
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatgga 232  Q
    |||||||||||| ||||||||| | ||| | |||||||||||||| ||||| |||||||||||||    
T  8680426 tcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaagatgga 8680362  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 7175510 - 7175432
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaag 246  Q
    ||||||||||||||| || ||  ||||  | |||||||||||||||||||||||||  |||||||  ||||||||||||    
T  7175510 tcacatactctccttgttaaaaaccaagcacgcagttcaaacttgcattttatccactagatggaagaatctctggaag 7175432  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 8656727 - 8656649
Alignment:
Q  168 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggatcaatctctggaag 246  Q
    |||||||||||| ||||||||  ||||| | ||||||||||||||  ||||  ||||||||||||  ||||||||||||    
T  8656727 tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag 8656649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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