View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669-Insertion-3 (Length: 436)
Name: NF0669-Insertion-3
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Complemental strand, 11987210 - 11986803
Alignment:
| Q |
10 |
aaaattagtttatattcacaatatttattattgattatagaaaactatataatataactaggagtatgttgataagaaaataatcaatacagctaaattt |
109 |
Q |
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| T |
11987210 |
aaaattagtttatattcacaatatttattattgattatagaaaactatataatataactaggagtatgttgataagaaaataatcattacagctaaattt |
11987111 |
T |
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| Q |
110 |
ttgaaaggatatttatttttgaaagaaggattccatattaattgctggaggtagtannnnnnnaggctttcttcgaagcttttattggtacatattttgt |
209 |
Q |
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| T |
11987110 |
ttgaaaggatatttatttttgaaagaaggattccatatttattgctggaggtagtatttttttaggctttcttcgaagcttttataggtacatattttgt |
11987011 |
T |
|
| Q |
210 |
tatttagattatgcttttacccaatcctttttaactaacttgtcattatcatctatattggttattgtgtcaaattagagtgtatcaaatgagtgggcta |
309 |
Q |
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| T |
11987010 |
tatttagattatgtttttacccaatcctttttaactaacttgtcattatcatctatattggttattgtgtcaaattagagtgtatcaaatgagtgggc-- |
11986913 |
T |
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| Q |
310 |
ataaaggagtgttcagtgatgttgaaaaccttacagaagagagaatagatgaagtaataaaggagtttatcaaagattttgaacaagggtccttagaaag |
409 |
Q |
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| T |
11986912 |
-taaaggagtcttcagtgatgttgaaaatcttacagatgagagaatagatgaagtaataaaggagtttatcaaagattttgaacaagggtccttagaaag |
11986814 |
T |
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| Q |
410 |
gaaaggttggc |
420 |
Q |
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| T |
11986813 |
aaaaggttggc |
11986803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 277 - 420
Target Start/End: Complemental strand, 12003003 - 12002863
Alignment:
| Q |
277 |
tgtcaaattagagtgtatcaaatgagtgggctaataaaggagtgttcagtgatgttgaaaaccttacagaagagagaatagatgaagtaataaaggagtt |
376 |
Q |
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| T |
12003003 |
tgtcaaattagtttgtatcgaatgaatgggctaa---aggagtcttcagtgatgttgaaaatcttacagaagagagaatagatgaagtgataaaggagtt |
12002907 |
T |
|
| Q |
377 |
tatcaaagattttgaacaagggtccttagaaaggaaaggttggc |
420 |
Q |
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| T |
12002906 |
tatcaaagattttgaagaagggtccttagaaagaaaaggttggc |
12002863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 12008217 - 12008089
Alignment:
| Q |
289 |
gtgtatcaaatgagtgggctaataaaggagtgttcagtgatgttgaaaaccttacagaagagagaatagatgaagtaataaaggagtttatcaaagattt |
388 |
Q |
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| T |
12008217 |
gtgtatcaaatgagtgggctaa---aggagtgttcagtgatgttgaaaaccttacagaagaaagaatagatgaagtgataaatgagtttatcaaagattt |
12008121 |
T |
|
| Q |
389 |
tgaacaagggtccttagaaaggaaaggttggc |
420 |
Q |
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|||| |||||||||||||||| ||| |||||| |
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| T |
12008120 |
tgaagaagggtccttagaaagaaaatgttggc |
12008089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 291 - 420
Target Start/End: Complemental strand, 11996478 - 11996352
Alignment:
| Q |
291 |
gtatcaaatgagtgggctaataaaggagtgttcagtgatgttgaaaaccttacagaagagagaatagatgaagtaataaaggagtttatcaaagattttg |
390 |
Q |
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||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |
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| T |
11996478 |
gtatcaaatgaatgggctaa---aggagtcttcagtgatgttgaaaaccttacagaagaaagaatagatgaagtgttagaggagtttatcaaagattttg |
11996382 |
T |
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| Q |
391 |
aacaagggtccttagaaaggaaaggttggc |
420 |
Q |
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|| |||| ||||||||||| |||||||||| |
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| T |
11996381 |
aagaaggttccttagaaagtaaaggttggc |
11996352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 28881533 - 28881595
Alignment:
| Q |
326 |
tgatgttgaaaaccttacagaagagagaatagatgaagtaataaaggagtttatcaaagattt |
388 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
28881533 |
tgatattgaaaatcttacagaagagagaatagataaagtactaatagagtttatcaaagattt |
28881595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 385
Target Start/End: Original strand, 28886314 - 28886373
Alignment:
| Q |
326 |
tgatgttgaaaaccttacagaagagagaatagatgaagtaataaaggagtttatcaaaga |
385 |
Q |
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|||| ||||||| ||||||||||||| ||||||||| ||| |||| |||||||||||||| |
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| T |
28886314 |
tgatattgaaaatcttacagaagagaaaatagatgaggtactaaaagagtttatcaaaga |
28886373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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