View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_high_11 (Length: 483)
Name: NF0669_high_11
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 22 - 467
Target Start/End: Original strand, 25403485 - 25403930
Alignment:
| Q |
22 |
catcatcaatgtctaagcatacccaccattttatgaatcaacatttgttatcttaacaaattcccatcactagagattagaggttaattatatattgttc |
121 |
Q |
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| T |
25403485 |
catcatcaatgtctaagcatacccaccattttatgaatcaacatttgttatcttaacaaattcccatcactagagattagaggttaattatatattgttc |
25403584 |
T |
|
| Q |
122 |
aaagttgccttgtgtaaaccaaagccaaatagtacatagaaaaatgccttgaatgaattgaaaatttgtttatagaaggggaatttttattgagtcttgt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25403585 |
aaagttgccttgtgtaaaccaaagccaaatagtacatagaaaaatgccttgaatgaattgaaaatttgtttatagaaggggaatttttgttgagtcttgt |
25403684 |
T |
|
| Q |
222 |
tgtcttttataaagtagatgcaactttacatgacatatctgaccccagcactgcgaatcacggatcgcagaaactaccagtttgttcaaatttcactttt |
321 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
25403685 |
tgtcttttataaagtagatgcaactttacatgacgtgcctgaccccagcactgcaaatcacggatcgcagaaactaccagtttgatcaaatttcactgtt |
25403784 |
T |
|
| Q |
322 |
ctatttcaatgaactatatactaagtagtggaaagcagaacaacgatttgttcaaatttcgctatgctgtaacgcagttaaatccgcaatttgacatcaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25403785 |
ctatttcaatgaactatatactaagtagtggaaagcggaacaacgatttgttcaaatttcgctatgctataacgcagttaaatccgcaatttgacatcaa |
25403884 |
T |
|
| Q |
422 |
gacccaactcttgttaagtgtttgttagtttgtttgttgatgatgt |
467 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25403885 |
gacccaactcttgttaagtgtttgttagtttgtttattgatgatgt |
25403930 |
T |
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