View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0669_high_12 (Length: 448)
Name: NF0669_high_12
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_high_12 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 33814716 - 33814292
Alignment:
| Q |
1 |
accaggtcatacgtctcattctcctttagggatttcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
33814716 |
accaggtcatacgtctcattctcctttagggatttcatctcttcttccatggattgtaaccatttttccttattggttgtctctatagcttccatgaagc |
33814617 |
T |
|
| Q |
101 |
tttgaggttcgccttcctcggtgaagtttacatattcacctgagaagtatcttcttgatgat-gtcca--tctcattgatcttctcaattgaggttcttg |
197 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||| | ||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
33814616 |
tttgaggttccccttcctcagtgaaatttacatattcacctgagaagtatctttttgatggttgtctagatctcgttgatcttctcaattgaggttcttg |
33814517 |
T |
|
| Q |
198 |
ttccatctcaacatcaacatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgtt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33814516 |
ttccatctcaacatcaacatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgtt |
33814417 |
T |
|
| Q |
298 |
agctgatcatgatcgtaattcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33814416 |
agctgatcatgatcgtaattcatctgaggaatctctccccctgaattgtgcaccacaatggtctttggctttttagattgaatgtcgtggatcgtctgat |
33814317 |
T |
|
| Q |
398 |
cttcatagaataccacgtctctgct |
422 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
33814316 |
cttcatagaataccacgtctctgct |
33814292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 816 - 395
Alignment:
| Q |
1 |
accaggtcatacgtctcattctcctttagggatttcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
816 |
accaggtcatacgtttcattctcctttagggattgcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagc |
717 |
T |
|
| Q |
101 |
tttgaggttcgccttcctcggtgaagtttacatattcacctgagaagtatcttcttgatgat-gtcca--tctcattgatcttctcaattgaggttcttg |
197 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
716 |
tttgaggttcgccttcctttgtgaagtttacatattcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttg |
617 |
T |
|
| Q |
198 |
ttccatctcaacatcaacatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgtt |
297 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
616 |
ttccatctcaacatcatcatcatcatctgccatatgctcttcatgcattgcttgattttggtctatctgatcaggctcatccatctgattgggttctgtt |
517 |
T |
|
| Q |
298 |
agctgatcatgatcgtaattcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgat |
397 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||| |||||| || || ||||||| ||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
516 |
agctgatcacgatcgtaattcatttgaggaatctctccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtgtattgtctgat |
417 |
T |
|
| Q |
398 |
cttcatagaataccacgtctct |
419 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
416 |
cttcatagaataccacatctct |
395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 54969331 - 54969752
Alignment:
| Q |
1 |
accaggtcatacgtctcattctcctttagggatttcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54969331 |
accaggtcatacgtgtcattctcctttagggattgcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagc |
54969430 |
T |
|
| Q |
101 |
tttgaggttcgccttcctcggtgaagtttacatattcacctgagaagtatcttcttgatgat-gtcca--tctcattgatcttctcaattgaggttcttg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
54969431 |
tttgaggttcgccttcctcggtgaagtttacatattcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttg |
54969530 |
T |
|
| Q |
198 |
ttccatctcaacatcaacatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgtt |
297 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||||||||||| |||||||||||||| |||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
54969531 |
ttccatctcaacatcatcatcatcatctgccatatgctcttcatgtattgcttgattttggtctacctgatcaggctcatccatctgattgggttctgtt |
54969630 |
T |
|
| Q |
298 |
agctgatcatgatcgtaattcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgat |
397 |
Q |
| |
|
||||||||| |||| |||||||| |||||||||||||||| |||||| || || ||||||| ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
54969631 |
agctgatcacgatcataattcatttgaggaatctctccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtggattgtctgat |
54969730 |
T |
|
| Q |
398 |
cttcatagaataccacgtctct |
419 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
54969731 |
cttcatagaataccacatctct |
54969752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 102 - 422
Target Start/End: Original strand, 13563709 - 13564032
Alignment:
| Q |
102 |
ttgaggttcgccttcctcggtgaagtttacatattcacctgagaagtatcttcttgatgat-gtcca--tctcattgatcttctcaattgaggttcttgt |
198 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
13563709 |
ttgaggttcgccttccttagtgaagtttacatattcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgt |
13563808 |
T |
|
| Q |
199 |
tccatctcaacatcaacatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgtta |
298 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
13563809 |
tccatctcaacatcatcatcatcatctgccatatgctcttcatgcattgcttgattttggtctatctgatcaggctcatccatctgattgggttctgtta |
13563908 |
T |
|
| Q |
299 |
gctgatcatgatcgtaattcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatc |
398 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| |||||| || || ||||||| ||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
13563909 |
gctgatcacgatcgtaattcatttgaggaatctctccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtgaattgtctgatc |
13564008 |
T |
|
| Q |
399 |
ttcatagaataccacgtctctgct |
422 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
13564009 |
ttcatagaataccacatctctgct |
13564032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 4284162 - 4284369
Alignment:
| Q |
19 |
ttctcctttagggatttcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcct |
118 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| | ||| | |
|
|
| T |
4284162 |
ttctcctttagggatggcatttcttcttgaatgcattgcagccatttttgcttattggttgtctctatggcttccatgatgctttgaggttccctttcat |
4284261 |
T |
|
| Q |
119 |
cggtgaagtttacatattcacctgagaagtatcttcttgatgat-gtc--catctcattgatcttctcaattgaggttcttgttccatctcaacatcaac |
215 |
Q |
| |
|
|| || |||| || |||| ||||||||| || ||| |||| ||| |||| |||||||||| ||| |||||||||||||||||||| ||||| | |
|
|
| T |
4284262 |
tagtaaaatttatattttcatgtgagaagtaactctttgttgatcgtctagatcttgttgatcttcttaatagaggttcttgttccatctcatcatcacc |
4284361 |
T |
|
| Q |
216 |
atcatcat |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
4284362 |
atcatcat |
4284369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 336
Target Start/End: Original strand, 4285562 - 4285666
Alignment:
| Q |
232 |
tgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatct |
331 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||| |||||| ||| || ||||| ||| |||| || | ||||||| ||||| |||||| |||||||||| |
|
|
| T |
4285562 |
tgctcttcctgcattgcttggttttgttatatgtgatcaagctacttcatcttattgggttgtgctttctgatcacaatcgttattcatttgaggaatct |
4285661 |
T |
|
| Q |
332 |
ctccc |
336 |
Q |
| |
|
||||| |
|
|
| T |
4285662 |
ctccc |
4285666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 9754435 - 9754853
Alignment:
| Q |
1 |
accaggtcatacgtctcattctcctttagggatttcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9754435 |
accaggtcatacgtctcattctcctttagggattgcatctcttcttccatggattacaaccatttttctttattggttgtctctatggcttccatgaagc |
9754534 |
T |
|
| Q |
101 |
tttgaggttcgccttcctcggtgaagtttacatattcacctgagaagtatcttcttgatgat-gtcca--tctcattgatcttctcaattgaggttcttg |
197 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
9754535 |
tttgaggttccccttcctcagtgaagtttacatattcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttg |
9754634 |
T |
|
| Q |
198 |
ttccatctcaacatcaacatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgtt |
297 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
9754635 |
ttccatctcaacatcctcatc------tgccatctgctcttcatgcattgcttgattttggtctatatgatcaggctcatccatctgattgggttctgtt |
9754728 |
T |
|
| Q |
298 |
agctgatcatgatcgtaattcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgat |
397 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||| || || ||||||| ||||||||| |||||||||||||||||||| |||| || |
|
|
| T |
9754729 |
agctgatcacgatcgtaattcatctgaggaatctctccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtggattgtctaat |
9754828 |
T |
|
| Q |
398 |
cttcatagaataccacgtctctgct |
422 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
9754829 |
cttcatagaataccacatctctgct |
9754853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 70 - 422
Target Start/End: Original strand, 4837704 - 4838059
Alignment:
| Q |
70 |
ttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacatattcacctgagaagtatcttcttgatgat-gtcca- |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| |||||| | ||| | |
|
|
| T |
4837704 |
ttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcaactgagaagtatctttttgatgtttgtctag |
4837803 |
T |
|
| Q |
168 |
-tctcattgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctg |
266 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| |||||||||||||| || |||||| |||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
4837804 |
atctcgttgatcttctcagttgaggttcttgtaccatctcaacatcatcaccatcatctgccatatgctcttcatgcattgcttgattttggtctatctg |
4837903 |
T |
|
| Q |
267 |
atcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctctccccttgaattttgcactacaatggtctttggc |
366 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||| || || ||||| | ||||||| |
|
|
| T |
4837904 |
atcaggctcatccatctgattgggttatgttagctgatcacgatcgtaattcatttgaggaatctctccccctgaattgtgtaccacaatcgcctttggc |
4838003 |
T |
|
| Q |
367 |
tttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgct |
422 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
4838004 |
ttattagattgaatgtcgtggattgtctgatcttcatagaataccacatctctgct |
4838059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4837665 - 4837704
Alignment:
| Q |
1 |
accaggtcatacgtctcattctcctttagggatttcatct |
40 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
4837665 |
accagatcatacgtctcattctcctttagggattgcatct |
4837704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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