View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_high_13 (Length: 404)

Name: NF0669_high_13
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_high_13
NF0669_high_13
[»] scaffold0131 (1 HSPs)
scaffold0131 (20-397)||(747-1126)
[»] chr5 (18 HSPs)
chr5 (20-397)||(28909215-28909595)
chr5 (20-397)||(28945610-28945990)
chr5 (20-397)||(28895967-28896347)
chr5 (20-397)||(28924793-28925173)
chr5 (20-397)||(28889263-28889643)
chr5 (20-331)||(20819968-20820279)
chr5 (20-331)||(20827068-20827379)
chr5 (48-391)||(20772747-20773090)
chr5 (48-391)||(20781522-20781865)
chr5 (20-244)||(28931061-28931287)
chr5 (151-391)||(24929862-24930102)
chr5 (175-397)||(19236805-19237030)
chr5 (154-397)||(22461039-22461286)
chr5 (154-397)||(22467663-22467910)
chr5 (270-330)||(34830086-34830146)
chr5 (354-387)||(38144472-38144505)
chr5 (267-322)||(18407944-18408000)
chr5 (268-323)||(42961566-42961622)
[»] scaffold1469 (1 HSPs)
scaffold1469 (48-397)||(1134-1485)
[»] chr6 (15 HSPs)
chr6 (48-382)||(21364423-21364757)
chr6 (48-382)||(23968405-23968739)
chr6 (41-391)||(9099005-9099357)
chr6 (93-397)||(20007872-20008181)
chr6 (271-397)||(11288596-11288721)
chr6 (269-392)||(31252423-31252549)
chr6 (271-397)||(15458492-15458620)
chr6 (271-397)||(15465087-15465215)
chr6 (310-397)||(28288437-28288522)
chr6 (267-397)||(34639910-34640043)
chr6 (267-397)||(34646584-34646717)
chr6 (310-397)||(24563480-24563569)
chr6 (151-194)||(29097747-29097790)
chr6 (310-397)||(24641607-24641696)
chr6 (267-330)||(10986173-10986237)
[»] chr3 (13 HSPs)
chr3 (20-397)||(14865593-14865976)
chr3 (48-392)||(12033375-12033723)
chr3 (41-391)||(19235002-19235354)
chr3 (154-397)||(17131615-17131862)
chr3 (267-392)||(23370435-23370562)
chr3 (310-397)||(10555353-10555439)
chr3 (269-397)||(51301589-51301720)
chr3 (271-397)||(10389368-10389496)
chr3 (271-397)||(10414457-10414585)
chr3 (271-397)||(10421127-10421255)
chr3 (269-379)||(13302185-13302295)
chr3 (269-379)||(13312841-13312951)
chr3 (269-379)||(13323732-13323842)
[»] scaffold0053 (1 HSPs)
scaffold0053 (20-397)||(79414-79798)
[»] chr7 (11 HSPs)
chr7 (116-382)||(2465208-2465474)
chr7 (116-382)||(3857308-3857574)
chr7 (20-397)||(16090822-16091206)
chr7 (20-397)||(29181033-29181417)
chr7 (48-397)||(20906386-20906738)
chr7 (224-397)||(2971209-2971384)
chr7 (269-397)||(14319554-14319684)
chr7 (300-397)||(14230813-14230911)
chr7 (268-392)||(14567203-14567329)
chr7 (48-229)||(2966741-2966925)
chr7 (271-397)||(31155396-31155524)
[»] scaffold0029 (2 HSPs)
scaffold0029 (48-382)||(91144-91481)
scaffold0029 (48-382)||(96870-97207)
[»] chr1 (4 HSPs)
chr1 (48-397)||(21710595-21710948)
chr1 (154-397)||(20851057-20851304)
chr1 (154-397)||(20857684-20857931)
chr1 (154-397)||(21706159-21706406)
[»] scaffold0072 (1 HSPs)
scaffold0072 (48-397)||(49894-50250)
[»] chr8 (4 HSPs)
chr8 (154-397)||(24320595-24320842)
chr8 (267-397)||(44477621-44477754)
chr8 (267-397)||(44492779-44492912)
chr8 (268-323)||(27940851-27940907)
[»] chr4 (3 HSPs)
chr4 (20-338)||(16146815-16147138)
chr4 (272-397)||(53483708-53483836)
chr4 (269-330)||(27906266-27906328)
[»] scaffold0023 (1 HSPs)
scaffold0023 (48-397)||(135216-135568)
[»] chr2 (8 HSPs)
chr2 (93-371)||(25180880-25181163)
chr2 (154-369)||(10460-10679)
chr2 (269-397)||(27207644-27207774)
chr2 (269-397)||(26885183-26885312)
chr2 (271-397)||(23168224-23168351)
chr2 (271-397)||(23579481-23579608)
chr2 (310-397)||(27366472-27366561)
chr2 (310-397)||(5705947-5706036)
[»] scaffold1318 (1 HSPs)
scaffold1318 (175-397)||(1837-2062)
[»] scaffold0384 (1 HSPs)
scaffold0384 (141-328)||(16059-16247)
[»] scaffold0348 (1 HSPs)
scaffold0348 (48-328)||(9113-9396)
[»] scaffold0553 (1 HSPs)
scaffold0553 (267-392)||(10125-10252)
[»] scaffold0544 (1 HSPs)
scaffold0544 (267-392)||(1455-1582)
[»] scaffold0127 (1 HSPs)
scaffold0127 (269-392)||(10239-10364)
[»] scaffold0001 (1 HSPs)
scaffold0001 (269-397)||(492953-493082)
[»] scaffold0609 (1 HSPs)
scaffold0609 (269-397)||(5781-5912)
[»] scaffold0183 (1 HSPs)
scaffold0183 (271-391)||(6-125)
[»] scaffold0720 (1 HSPs)
scaffold0720 (269-397)||(3327-3457)
[»] scaffold0249 (1 HSPs)
scaffold0249 (271-397)||(13819-13947)
[»] scaffold0026 (1 HSPs)
scaffold0026 (267-397)||(111684-111817)
[»] scaffold0099 (1 HSPs)
scaffold0099 (151-321)||(12836-13019)
[»] scaffold0261 (1 HSPs)
scaffold0261 (269-330)||(23562-23624)
[»] scaffold0815 (1 HSPs)
scaffold0815 (208-245)||(1388-1425)
[»] scaffold0129 (1 HSPs)
scaffold0129 (361-397)||(45198-45234)


Alignment Details
Target: scaffold0131 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 747 - 1126
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    ||||||| |||||||| ||||||  ||| |||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  747 gacatcaacaggaacagcaactaaacataaacaacaacaatccagcccaatcaagcattaatacagaaaatcccaaattcatacataacatgctattttc 846  T
Q  119 atccaattatgatctacaatagcaatacagactaggaaa-tcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatc 217  Q
    |||||||||||||| |||| | || || ||| | ||||| || |||||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||    
T  847 atccaattatgatcaacaacaacattataga-tcggaaactcttactaatcatcaaacacaactttataaacctaaatcttacacattttcttcaaaatc 945  T
Q  218 atcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattga-agatgatcccaccctt 316  Q
      ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  946 gccattaaccctaattttcccaattttaccataagaacagttaaattgcttaattttcagaaatcatatattatcactattgagagatgatcccaccctt 1045  T
Q  317 accttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1046 accttagaattgcaaagacaaaagcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 1126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 28909595 - 28909215
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    ||||||| |||||||||||||||  |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||    
T  28909595 gacatcaacaggaacaacaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28909496  T
Q  119 atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca 218  Q
    |||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||    
T  28909495 atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatca 28909396  T
Q  219 tcattaaccctaattttcccaa-ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctt 316  Q
    |||| || |||||||||||||| ||||||| |||||||| ||||||   | ||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  28909395 tcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccctt 28909296  T
Q  317 accttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28909295 accttagaattgcaacgacaaaagcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28909215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 28945990 - 28945610
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    ||||||| |||||||||||||||  |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||    
T  28945990 gacatcaacaggaacaacaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28945891  T
Q  119 atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca 218  Q
    |||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||    
T  28945890 atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatca 28945791  T
Q  219 tcattaaccctaattttcccaa-ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctt 316  Q
    |||| || |||||||||||||| ||||||| |||||||| ||||||   | ||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  28945790 tcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccctt 28945691  T
Q  317 accttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28945690 accttagaattgcaacgacaaaagcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28945610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 28896347 - 28895967
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    ||||||| |||||||| ||||||  |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||    
T  28896347 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28896248  T
Q  119 atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca 218  Q
    |||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||    
T  28896247 atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatca 28896148  T
Q  219 tcattaaccctaattttcccaa-ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctt 316  Q
    |||| || |||||||||||||| ||||||| |||||||| ||||||   | ||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  28896147 tcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccctt 28896048  T
Q  317 accttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28896047 accttagaattgcaacggcaaaagcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28895967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 28925173 - 28924793
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    ||||||| |||||||| ||||||  |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||    
T  28925173 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28925074  T
Q  119 atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca 218  Q
    |||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||    
T  28925073 atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatca 28924974  T
Q  219 tcattaaccctaattttcccaa-ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctt 316  Q
    |||| || |||||||||||||| ||||||| |||||||| ||||||   | ||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  28924973 tcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccctt 28924874  T
Q  317 accttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28924873 accttagaattgcaacggcaaaagcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 28889643 - 28889263
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    ||||||| |||||||| ||||||  |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||    
T  28889643 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28889544  T
Q  119 atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca 218  Q
    |||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||    
T  28889543 atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatca 28889444  T
Q  219 tcattaaccctaattttcccaa-ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctt 316  Q
    |||| || |||||||||||||| ||||||| |||||||| ||||||   | ||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  28889443 tcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccctt 28889344  T
Q  317 accttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||| | ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28889343 accttagaattgcaacggcaaaagcaatgcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28889263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 20819968 - 20820279
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    ||||||| |||||||| ||||||  ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  20819968 gacatcaacaggaacagcaactaaacataaacaacaacaatttagcccaatcaagcattcatacagaaaattccaaattcatacataacatgctatttgc 20820067  T
Q  119 atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca 218  Q
    |||||||||||||| || | | ||||||  | ||||  |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  20820068 atccaattatgatcaactacaacaatactaattagg-gatcatactcatcatcaaatacaacattataaacctgaatcttatgcattctcttcaaaatca 20820166  T
Q  219 tcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctta 317  Q
    ||||||||||||||||| ||||||||||| ||||||| ||| ||||||| |||  |||||||| |||||||| || ||||| ||||||||||||||||||    
T  20820167 tcattaaccctaatttt-ccaattttaccttaagaacggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccaccctta 20820265  T
Q  318 ccttagaattgcaa 331  Q
    ||||||||||||||    
T  20820266 ccttagaattgcaa 20820279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 20827068 - 20827379
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    ||||||| |||||||| ||||||  ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  20827068 gacatcaacaggaacagcaactaaacataaacaacaacaatttagcccaatcaagcattcatacagaaaattccaaattcatacataacatgctatttgc 20827167  T
Q  119 atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca 218  Q
    |||||||||||||| || | | ||||||  | ||||  |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  20827168 atccaattatgatcaactacaacaatactaattagg-gatcatactcatcatcaaatacaacattataaacctgaatcttatgcattctcttcaaaatca 20827266  T
Q  219 tcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctta 317  Q
    ||||||||||||||||| ||||||||||| ||||||| ||| ||||||| |||  |||||||| |||||||| || ||||| ||||||||||||||||||    
T  20827267 tcattaaccctaatttt-ccaattttaccttaagaacggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccaccctta 20827365  T
Q  318 ccttagaattgcaa 331  Q
    ||||||||||||||    
T  20827366 ccttagaattgcaa 20827379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 48 - 391
Target Start/End: Original strand, 20772747 - 20773090
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa--ttcatacataacatgctattttcatccaattatgatctacaatagcaata 145  Q
    ||||||||||||| |  |||||||| |||||||  ||||  |||||||  ||||| ||| | || ||| |||||||||||||||||| |||  | |||||    
T  20772747 aacaacaacaattaactccaatcaaacattcattcagaac-ttccaaaacttcatccattatattctactttcatccaattatgatcaacatcaacaata 20772845  T
Q  146 cagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaatttta 245  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  20772846 tagagtaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcaaaatcatcattaaccctaaatttcccaatttta 20772945  T
Q  246 ccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagacaaaagcaca 344  Q
    || ||||||||||||||||  | ||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||  |||| |||    
T  20772946 ccttaagaacagttaaattgattaattttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaaaga-taaagtaca 20773044  T
Q  345 acaaatcaattcctaggttcttctctcttggtcttctctccttgcct 391  Q
     |||||||||||||| | |||||||||||||||||||| ||||||||    
T  20773045 gcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 20773090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 48 - 391
Target Start/End: Original strand, 20781522 - 20781865
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa--ttcatacataacatgctattttcatccaattatgatctacaatagcaata 145  Q
    ||||||||||||| |  |||||||| |||||||  ||||  |||||||  ||||| ||| | || ||| |||||||||||||||||| |||  | |||||    
T  20781522 aacaacaacaattaactccaatcaaacattcattcagaac-ttccaaaacttcatccattatattctactttcatccaattatgatcaacatcaacaata 20781620  T
Q  146 cagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaatttta 245  Q
     ||| |||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  20781621 tagagtaggaaatcataataatcatcaaatacaacattataaacctgattcttacacattttcttcaaaatcatcattaaccctaaatttcccaatttta 20781720  T
Q  246 ccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagacaaaagcaca 344  Q
    || ||||||||||||||||  | ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||  |||| |||    
T  20781721 ccttaagaacagttaaattgattaattttcagaaatcatatattataattattgaaagataatcccacccttaccttagaattgcaaaga-taaagtaca 20781819  T
Q  345 acaaatcaattcctaggttcttctctcttggtcttctctccttgcct 391  Q
     |||||||||||||| | |||||||||||||||||||| ||||||||    
T  20781820 gcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 20781865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 28931287 - 28931061
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    ||||||| |||||||| ||||||  |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||    
T  28931287 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28931188  T
Q  119 atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttc-aaaatc 217  Q
    |||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||| |||||||||| |||| |    
T  28931187 atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacccattttcttcaaaaacc 28931088  T
Q  218 atcattaaccctaattttcccaatttt 244  Q
    ||||| || ||||||||||||||||||    
T  28931087 atcatcaaacctaattttcccaatttt 28931061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 151 - 391
Target Start/End: Complemental strand, 24930102 - 24929862
Alignment:
Q  151 taggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccata 250  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||| ||||||||||||||| ||    
T  24930102 taggaaatcatactaatcatcaaatacaacattataaacctgattcttacacatttccttcagaatcatcattaaccctaaatttcccaattttacctta 24930003  T
Q  251 agaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagacaaaagcacaacaa 348  Q
    |||||||||||||| | | | |||| |||||||||||||||  | ||||| ||||| ||||||||||||||||||||||| |||||  ||||  || |||    
T  24930002 agaacagttaaattgattaattttttagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgtaaaga-taaagtgcagcaa 24929904  T
Q  349 atcaattcctaggttcttctctcttggtcttctctccttgcct 391  Q
     |||||||||| | |||||||||||||||||||| ||||||||    
T  24929903 gtcaattcctaagctcttctctcttggtcttctc-ccttgcct 24929862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 175 - 397
Target Start/End: Original strand, 19236805 - 19237030
Alignment:
Q  175 tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattt 273  Q
    ||||||| |||||||||||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||  | |||||    
T  19236805 tacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattt 19236904  T
Q  274 tcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagac-aaaagcacaacaaatcaattcctaggttcttctctc 371  Q
    |||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| |||||||||||    
T  19236905 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctc 19237004  T
Q  372 ttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||| ||||    
T  19237005 ttggtcttctctccttgccttagctt 19237030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 154 - 397
Target Start/End: Original strand, 22461039 - 22461286
Alignment:
Q  154 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccataag 252  Q
    |||| |||||||| ||||||| ||| ||| |||||||||||  ||||  | |||||||  |||||||| |||||||||| ||||||||||||||| ||||    
T  22461039 gaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatttcccaattttaccttaag 22461138  T
Q  253 aacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaa 349  Q
    ||||||| |||| | | | ||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  22461139 aacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaggcacagcaaa 22461238  T
Q  350 tcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| ||| || |||||||||||||||||||||||||||||||| ||||    
T  22461239 tcagttcttaagttcttctctcttggtcttctctccttgccttagctt 22461286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 154 - 397
Target Start/End: Original strand, 22467663 - 22467910
Alignment:
Q  154 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccataag 252  Q
    |||| |||||||| ||||||| ||| ||| |||||||||||  ||||  | |||||||  |||||||| |||||||||| ||||||||||||||| ||||    
T  22467663 gaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatttcccaattttaccttaag 22467762  T
Q  253 aacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaa 349  Q
    ||||||| |||| | | | ||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  22467763 aacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaggcacagcaaa 22467862  T
Q  350 tcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| ||| || |||||||||||||||||||||||||||||||| ||||    
T  22467863 tcagttcttaagttcttctctcttggtcttctctccttgccttagctt 22467910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 34830086 - 34830146
Alignment:
Q  270 attttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgca 330  Q
    |||||||||||| ||| ||||  ||||||||| ||| |||||||||||||||||||||||||    
T  34830086 attttcagaaattatacattaa-attattgaaagataatcccacccttaccttagaattgca 34830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 387
Target Start/End: Complemental strand, 38144505 - 38144472
Alignment:
Q  354 ttcctaggttcttctctcttggtcttctctcctt 387  Q
    |||||| |||||||||||||||||||||||||||    
T  38144505 ttcctaagttcttctctcttggtcttctctcctt 38144472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 18408000 - 18407944
Alignment:
Q  267 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttacctta 322  Q
    ||||||||||||||| ||||||||| |||||||| ||||  || |||||||||||||    
T  18408000 tcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 42961566 - 42961622
Alignment:
Q  268 caattttcagaaatcatatattatcattattgaagatgatcc-cacccttaccttag 323  Q
    |||||||||||||||||||||||| || ||||||| | | || ||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttag 42961622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 48 - 397
Target Start/End: Original strand, 1134 - 1485
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaataca 147  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||    
T  1134 aacaacaacaattcagcccaatcaagcattcatacagaaacttccaaattcacacataacatgctattttcatccaattatgatcaacaacaacaataca 1233  T
Q  148 gactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttacc 247  Q
    || ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  1234 gattaggaaatcatactaatcatcaattataacattgtaaacctgaatcttacgcattttcttcaaaatcatcattagacctaattttcccaattttacc 1333  T
Q  248 ataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagaca---aaagcac 343  Q
     ||||||||||||||||  | |||||||||||| ||||||||| || ||||| |||   |||||||||||||||||||||||||||||||   ||||| |    
T  1334 ttaagaacagttaaattgtttaattttcagaaagcatatattaacactattgaaaggaaatcccacccttaccttagaattgcaaagacaaagaaagctc 1433  T
Q  344 aacaaatcaattc-ctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| |||| |||| ||| ||||||| |||||||||||||| ||||||||| ||||    
T  1434 aac-aatcgattctcta-gttcttccctcttggtcttctc-ccttgccttagctt 1485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 9e-86; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 48 - 382
Target Start/End: Complemental strand, 21364757 - 21364423
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttcatccaattatgatctacaatagcaatac 146  Q
    |||||||||||||||  | |||||| |||||||  ||||  ||| ||| ||||| ||| | || |||  ||||||||||||||||| |||  | ||||||    
T  21364757 aacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatccaattatgatcaacatcaacaatac 21364658  T
Q  147 agactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttac 246  Q
    ||| |||||||||||| |||||||||||||||||||||||||||| | ||||||  |||||||||||||    ||||||||||||||| |||||||||||    
T  21364657 agagtaggaaatcatattaatcatcaaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccctaattt-cccaattttac 21364559  T
Q  247 cataagaacagttaaattactcaattttcagaaatcatatattatcattattgaag-atgatcccacccttaccttagaattgcaaagacaaaagcacaa 345  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||     
T  21364558 cataa-aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaagacaaaagcacag 21364460  T
Q  346 caaatcaattcctaggttcttctctcttggtcttctc 382  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21364459 caaaacaattcctaggttcttctctcttggtcttctc 21364423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 48 - 382
Target Start/End: Complemental strand, 23968739 - 23968405
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttcatccaattatgatctacaatagcaatac 146  Q
    |||||||||||||||  | |||||| |||||||  ||||  ||| ||| ||||| ||| | || |||  ||||||||||||||||| |||  | ||||||    
T  23968739 aacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatccaattatgatcaacatcaacaatac 23968640  T
Q  147 agactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttac 246  Q
    ||| |||||||||||| |||||||||||||||||||||||||||| | ||||||  |||||||||||||    ||||||||||||||| |||||||||||    
T  23968639 agagtaggaaatcatattaatcatcaaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccctaattt-cccaattttac 23968541  T
Q  247 cataagaacagttaaattactcaattttcagaaatcatatattatcattattgaag-atgatcccacccttaccttagaattgcaaagacaaaagcacaa 345  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||     
T  23968540 cataa-aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaagacaaaagcacag 23968442  T
Q  346 caaatcaattcctaggttcttctctcttggtcttctc 382  Q
    |||| ||||||||||||||||||||||||||||||||    
T  23968441 caaaacaattcctaggttcttctctcttggtcttctc 23968405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 41 - 391
Target Start/End: Complemental strand, 9099357 - 9099005
Alignment:
Q  41 tagcattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttca-tccaa-ttatgatctacaat 138  Q
    |||||| ||||||||||||| |  |||||||| |||||||  ||||  | | ||||||||  || | || ||||||||| ||||| |||||||| | |      
T  9099357 tagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaaattatgatcaatatc 9099258  T
Q  139 agcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttccc 238  Q
    | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||    
T  9099257 aacaatatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcagaatcatcattaaccctaaatttccc 9099158  T
Q  239 aattttaccataagaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagaca 336  Q
    ||||||||| |||||||||||||||| | | | ||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||      
T  9099157 aattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaaaga-t 9099059  T
Q  337 aaagcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcct 391  Q
    ||||  || |||||||||||||| | |||||||||||||||||||| ||||||||    
T  9099058 aaagtgcagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 9099005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 93 - 397
Target Start/End: Complemental strand, 20008181 - 20007872
Alignment:
Q  93 aaattcatacataacatgctattttcat-ccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaa-tacaacattataaacc 190  Q
    |||||||| ||| | || |||||||||| ||||||| ||||  ||  | ||||| ||| || |||| |||||||| ||||||| ||||||| ||||||||    
T  20008181 aaattcattcatcatattctattttcattccaattacgatcagcatcaacaatatagattaagaaaacatactaaacatcaaagtacaacaatataaacc 20008082  T
Q  191 tgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaatttt-cagaaatcatatat 288  Q
    |||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||  | |||||| || |||| ||||||    
T  20008081 tgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaatttttcataaattatatat 20007982  T
Q  289 tatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctctcctt 387  Q
    ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||    
T  20007981 tatgactattgaaagatgatcccacccttaccttagaattgcaaagacaaaagcacagcaaatgagttcctaagttcttctctcttggtcttctctcctt 20007882  T
Q  388 gcctttgctt 397  Q
    ||||| ||||    
T  20007881 gccttagctt 20007872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 11288721 - 11288596
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctc 369  Q
    ||||||||||| ||||||||  || |||||| ||| |||||||||||||||||||||||| ||||||||| |||| | ||||| |||||| | |||||||    
T  11288721 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagaattgccaagacaaaaacacagc-aatcagttcctaagctcttctc 11288623  T
Q  370 tcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||| ||||||||| ||||    
T  11288622 tcttggtcttctc-ccttgccttagctt 11288596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 31252423 - 31252549
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattcctaggttc 364  Q
    ||||||||||||| ||||||||| || ||| || ||| ||| |||||||||||||||||||||||||||   ||| |||| | ||||  |||||| ||||    
T  31252423 aattttcagaaattatatattataatcattaaaagataatctcacccttaccttagaattgcaaagacaaagaaaacacagc-aatcggttcctaagttc 31252521  T
Q  365 ttctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||||||||||||||    
T  31252522 ttctctcttggtcttctctccttgcctt 31252549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 397
Target Start/End: Original strand, 15458492 - 15458620
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattc-ctaggttct 365  Q
    ||||||||||| ||||||||| || |||||| ||| |||||||||||||||||||||||||||||||   ||||| |||| |||| |||| ||| |||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaagctcaac-aatcgattctcta-gttct 15458589  T
Q  366 tctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||| ||||||||| ||||    
T  15458590 tctctcttggtcttctc-ccttgccttagctt 15458620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 397
Target Start/End: Original strand, 15465087 - 15465215
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattc-ctaggttct 365  Q
    ||||||||||| ||||||||| || |||||| ||| |||||||||||||||||||||||||||||||   ||||| |||| |||| |||| ||| |||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaagctcaac-aatcgattctcta-gttct 15465184  T
Q  366 tctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||| ||||||||| ||||    
T  15465185 tctctcttggtcttctc-ccttgccttagctt 15465215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 28288522 - 28288437
Alignment:
Q  310 cacccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||||| |||| | ||||| |||||| | | |||||||||||||||||| ||||||||| ||||    
T  28288522 cacccttaccttagaattgcaaagacaaaaacacagc-aatcagttcctaagcttttctctcttggtcttctc-ccttgccttagctt 28288437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 397
Target Start/End: Complemental strand, 34640043 - 34639910
Alignment:
Q  267 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgcaaagacaaa---agcacaacaaatcaattc-ctagg 361  Q
    ||||||||||||||| ||| ||||  |||||||| ||||  || |||||||||||||||||||| ||||||||   | |||| ||| || |||| ||||     
T  34640043 tcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagcaa-tcgattctctag- 34639946  T
Q  362 ttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||||||||||| ||||    
T  34639945 ttcttctctcttggtcttctctccttgccttagctt 34639910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 397
Target Start/End: Complemental strand, 34646717 - 34646584
Alignment:
Q  267 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgcaaagacaaa---agcacaacaaatcaattc-ctagg 361  Q
    ||||||||||||||| ||| ||||  |||||||| ||||  || |||||||||||||||||||| ||||||||   | |||| ||| || |||| ||||     
T  34646717 tcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagcaa-tcgattctctag- 34646620  T
Q  362 ttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||||||||||| ||||    
T  34646619 ttcttctctcttggtcttctctccttgccttagctt 34646584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 24563480 - 24563569
Alignment:
Q  310 cacccttaccttagaattgcaaagacaaa---agcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||||   | |||| ||| || |||||   |||||||||||||||||||||||||||||||| ||||    
T  24563480 cacccttaccttagaattgcaaagacaaagaaaacacagcaa-tcgattccctagttcttctctcttggtcttctctccttgccttagctt 24563569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 29097747 - 29097790
Alignment:
Q  151 taggaaatcatactaatcatcaaatacaacattataaacctgaa 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  29097747 taggaaatcatactaatcatcaaatacaacagtataaacctgaa 29097790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 24641696 - 24641607
Alignment:
Q  310 cacccttaccttagaattgcaaagacaaa---agcacaacaaatcaattc-ctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||| ||||||||   | |||| ||| || |||| |||| ||||||||||||||||||||||||||||||| ||||    
T  24641696 cacccttaccttagaattgcgaagacaaagaaaacacagcaa-tcgattctctag-ttcttctctcttggtcttctctccttgccttagctt 24641607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 10986237 - 10986173
Alignment:
Q  267 tcaattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgca 330  Q
    |||||||| |||||| ||| ||||| ||||||||| |||  || |||||||||||||||||||||    
T  10986237 tcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgca 10986173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 9e-83; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 14865593 - 14865976
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    ||||||| |||||||||||||||  ||| |||||||||||||||||||||||||||||||||| ||||  | | |||||||| ||| | || ||||||||    
T  14865593 gacatcaacaggaacaacaactaaacatcaacaacaacaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 14865692  T
Q  119 atc-caattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaa 215  Q
    ||  |||||| |||| | |  | ||| |  || || |||||||||||||||||| || ||||||||||||||||||  |||||| | ||||||| |||||    
T  14865693 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcatccaagtacaacattataaacctgcttcttacaccttttctttcaaaa 14865792  T
Q  216 tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccc 314  Q
    |||||||||||| | ||||||||||||||||| ||||||||||| ||||  | ||||||||||||| | ||||||| | ||||| ||||| |||||||||    
T  14865793 tcatcattaaccattattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 14865892  T
Q  315 ttaccttagaattgcaaagacaaa-agcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  14865893 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 14865976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 48 - 392
Target Start/End: Complemental strand, 12033723 - 12033375
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttca-tccaattatgatctacaatagcaata 145  Q
    |||||||||||||||||||| ||||||||||||| | ||| ||||||| ||||| ||| | || ||||||||| | |||||| |||| |||  | ||| |    
T  12033723 aacaacaacaattcagcccattcaagcattcataca-aaacttccaaaattcatccatcatattctattttcaattcaattacgatcaacatcaacaaca 12033625  T
Q  146 cagactaggaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattt 243  Q
     ||| || ||||||||||||| ||||||| ||||||||||||||||||| |||||  | ||||||| ||||||||||||||||||| | |||||||||||    
T  12033624 tagattaagaaatcatactaaacatcaaagtacaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatttcccaattt 12033525  T
Q  244 taccataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaagca 342  Q
    |||| ||||||||||| ||||  | ||||||||||||| ||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  12033524 taccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaagca 12033425  T
Q  343 caacaaatcaattcctaggttcttctctcttggtcttctctccttgcctt 392  Q
    || ||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  12033424 catcaaatcagttcctaagttcttctctcttggtcttctctccttacctt 12033375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 41 - 391
Target Start/End: Complemental strand, 19235354 - 19235002
Alignment:
Q  41 tagcattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttca-tccaa-ttatgatctacaat 138  Q
    |||||| ||||||||||||| |  |||||||| |||||||  ||||  | | ||||||||  || | || ||||||||| ||||| |||||||| | |      
T  19235354 tagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaaattatgatcaatatc 19235255  T
Q  139 agcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttccc 238  Q
    | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||    
T  19235254 aacaatatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcagaatcatcattaaccctaaatttccc 19235155  T
Q  239 aattttaccataagaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagaca 336  Q
    ||||||||| |||||||||||||||| | | | ||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||      
T  19235154 aattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaaaga-t 19235056  T
Q  337 aaagcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcct 391  Q
    ||||  || |||||||||||||| | |||||||||||||||||||| ||||||||    
T  19235055 aaagtgcagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 19235002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 154 - 397
Target Start/End: Original strand, 17131615 - 17131862
Alignment:
Q  154 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa 251  Q
    ||||||||||||| ||||||| |||||||||||||||||||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| |||    
T  17131615 gaaatcatactaaacatcaaagtacaacattataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 17131714  T
Q  252 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagac-aaaagcacaacaaa 349  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  17131715 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaa 17131814  T
Q  350 tcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  17131815 tcagttcctaagttcttctctcttggtcttctctccttgccttagctt 17131862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 23370562 - 23370435
Alignment:
Q  267 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttc 364  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  |||||||||||||||||||||| | |||||||| ||||| ||||||  |||||| ||||    
T  23370562 tcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttc 23370463  T
Q  365 ttctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||||||||||||||    
T  23370462 ttctctcttggtcttctctccttgcctt 23370435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 10555353 - 10555439
Alignment:
Q  310 cacccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||| ||| ||||||| || |||||||||| |||| | |||||||||||||||||||| ||||||||| ||||    
T  10555353 cacccttaccttagaattgtaaacacaaaagtacgacaaatcaatccctaagctcttctctcttggtcttctc-ccttgccttagctt 10555439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 397
Target Start/End: Original strand, 51301589 - 51301720
Alignment:
Q  269 aattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattc-ctaggtt 363  Q
    ||||||||||||| | ||||||| ||||||| ||||| ||| |||||||||||||||||||| ||||||   ||| |||| | |||| |||| ||| |||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctcta-gtt 51301686  T
Q  364 cttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||||||||| ||||    
T  51301687 cttctctcttggtcttctctccttgccttagctt 51301720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 10389496 - 10389368
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattcctaggttctt 366  Q
    ||||||||||| ||| ||||| || |||||| ||| |||||||||||||||||||||||||||||||   ||||| ||||||   | || ||| ||||||    
T  10389496 ttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaagctcaacaatcgattttcta-gttctt 10389398  T
Q  367 ctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||| ||||||||| ||||    
T  10389397 ctctcttggtcttctc-ccttgccttagctt 10389368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 10414585 - 10414457
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattcctaggttctt 366  Q
    ||||||||||| ||| ||||| || |||||| ||| |||||||||||||||||||||||||||||||   ||||| ||||||   | || ||| ||||||    
T  10414585 ttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaagctcaacaatcgattttcta-gttctt 10414487  T
Q  367 ctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||| ||||||||| ||||    
T  10414486 ctctcttggtcttctc-ccttgccttagctt 10414457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 10421255 - 10421127
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattcctaggttctt 366  Q
    ||||||||||| ||| ||||| || |||||| ||| |||||||||||||||||||||||||||||||   ||||| ||||||   | || ||| ||||||    
T  10421255 ttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaagctcaacaatcgattttcta-gttctt 10421157  T
Q  367 ctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||| ||||||||| ||||    
T  10421156 ctctcttggtcttctc-ccttgccttagctt 10421127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 379
Target Start/End: Complemental strand, 13302295 - 13302185
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttc 367  Q
    ||||||||||||| | ||||||| ||||||||| ||| ||| ||||||||||||||||||| | | | |||| |||| ||||||| ||||||||||| ||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttagaattgtaga-aaaaaaacacagcaaatcagttcctaggttcatc 13302197  T
Q  368 tctcttggtctt 379  Q
    || |||| ||||    
T  13302196 tcccttgttctt 13302185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 379
Target Start/End: Complemental strand, 13312951 - 13312841
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttc 367  Q
    |||||||| |||| | ||||||| ||||||||| ||| ||| ||||||||||||||||||| | | | |||| |||| ||||||| ||||||||||| ||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttagaattgtaga-aaaaaaacacagcaaatcagttcctaggttcatc 13312853  T
Q  368 tctcttggtctt 379  Q
    || |||| ||||    
T  13312852 tcccttgttctt 13312841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 379
Target Start/End: Complemental strand, 13323842 - 13323732
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttc 367  Q
    ||||||||||||| | ||||||| ||||||||| ||| ||| ||||||||||||||||||| | | | ||||   || ||||||| ||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttagaattgtaga-aaaaaaaatcagcaaatcagttcctaggttcttc 13323744  T
Q  368 tctcttggtctt 379  Q
    || |||| ||||    
T  13323743 tcccttgttctt 13323732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 79798 - 79414
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    |||||||  ||||||| ||||||  ||| ||||||| |||||||||||||||||||||||||| ||||  | | |||||||| ||| | || ||||||||    
T  79798 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 79699  T
Q  119 atc-caattatgatctacaatagcaatacagactaggaaatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaa 215  Q
    ||  |||||| |||| | |  | ||| |  || || ||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||| |||||    
T  79698 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa 79599  T
Q  216 tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccc 314  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| ||||  | ||||||||||||| | ||||||| | ||||| ||||| |||||||||    
T  79598 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 79499  T
Q  315 ttaccttagaattgcaaagacaaa-agcacaac-aaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||| |||||| | |||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  79498 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 79414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 116 - 382
Target Start/End: Original strand, 2465208 - 2465474
Alignment:
Q  116 ttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaa 215  Q
    ||||||||||||||||| |||  | ||||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  2465208 ttcatccaattatgatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatataacattataaacctaaatcttacacattttcttcaaaa 2465307  T
Q  216 tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccaccc 314  Q
    |   ||||||||||||||| || | ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||    
T  2465308 ttgccattaaccctaatttcccaatttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaggatgatcccaccc 2465407  T
Q  315 ttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctc 382  Q
    ||||||||||||||||||||  ||||  || |||| ||||| ||| | ||||||||||||||||||||    
T  2465408 ttaccttagaattgcaaaga-taaagtgcagcaaaccaatttctaagctcttctctcttggtcttctc 2465474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 116 - 382
Target Start/End: Complemental strand, 3857574 - 3857308
Alignment:
Q  116 ttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaa 215  Q
    ||||||||||||| ||| |||  | ||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  3857574 ttcatccaattataatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaa 3857475  T
Q  216 tcatcattaaccctaattttcccaatttt---accataagaacagttaaattactcaattttcagaaatcatatattatcattattgaagatgatcccac 312  Q
    |   ||||||||||||||| |||||||||   ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  3857474 ttgccattaaccctaattt-cccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaagatgatcccac 3857376  T
Q  313 ccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctctcttggtcttctc 382  Q
    ||||||||||||||||| ||||  ||||  || |||| ||||| ||| | ||||||||||||||||||||    
T  3857375 ccttaccttagaattgc-aaga-taaagtgcagcaaaccaatttctaagctcttctctcttggtcttctc 3857308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 16090822 - 16091206
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    |||||||  ||||||| ||||||  ||| ||||||| |||||||||||||||||||||||||  ||||  | | |||||||| ||| | || ||||||||    
T  16090822 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 16090921  T
Q  119 atc-caattatgatctacaatagcaatacagactaggaaatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaa 215  Q
    ||  |||||| |||| | |  | ||| |  || || ||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||| |||||    
T  16090922 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa 16091021  T
Q  216 tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccc 314  Q
    |||||||||||||| ||||||||||||||||| || |||||||| ||||  | || |||||||||| | ||||||| | ||||| ||||| |||||||||    
T  16091022 tcatcattaacccttattttcccaattttaccttaggaacagtttaattgattaactttcagaaattacatattatgactattgaaagataatcccaccc 16091121  T
Q  315 ttaccttagaattgcaaagacaaa-agcacaac-aaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||| |||||| | |||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  16091122 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 16091206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 29181417 - 29181033
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    |||||||  ||||||| ||||||  ||| ||||||| |||||||||||||||||||||||||| ||||  | | |||||||| ||| | || ||||||||    
T  29181417 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 29181318  T
Q  119 atc-caattatgatctacaatagcaatacagactaggaaatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaa 215  Q
    ||  |||||| |||| | |  | ||| |  || || ||||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||| |||||    
T  29181317 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataagcctgattcttacaccttttctttcaaaa 29181218  T
Q  216 tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccc 314  Q
    |||||||||||||| ||||||| ||||||||| |||||| |||| ||||  | ||||||||||||| | ||||||| | ||||| ||||| |||||||||    
T  29181217 tcatcattaacccttattttccaaattttaccttaagaatagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 29181118  T
Q  315 ttaccttagaattgcaaagacaaa-agcacaac-aaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||| |||||| | |||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  29181117 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 29181033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 48 - 397
Target Start/End: Complemental strand, 20906738 - 20906386
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatac 146  Q
    |||||||||||||||||||| |||||||||| || | ||| |||  ||||||| ||| | || ||||||||||  |||||| |||| |||  | ||| |     
T  20906738 aacaacaacaattcagcccattcaagcattcttaca-aaacttctcaattcatccatcatattctattttcatttcaattacgatcaacatcaacaacat 20906640  T
Q  147 agactaggaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaatttt 244  Q
    ||| || ||||||||||||| ||||||| ||||||||||||||| ||| |||||  | ||||||| ||||||||||||||||||| | || |||||||||    
T  20906639 agattaagaaatcatactaaacatcaaagtacaacattataaacttgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaatttt 20906541  T
Q  245 accataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaa-agca 342  Q
    ||| |||||| |||| ||||  | ||||||||||||| ||||||||| | ||||||| ||| |||||||||||||||||||||||||| |||||| |||     
T  20906540 accttaagaatagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaggacaaatagct 20906441  T
Q  343 caacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    || ||||||  |||||| |||||||||||||||||||||| ||||||||| ||||    
T  20906440 cagcaaatccgttcctaagttcttctctcttggtcttctccccttgccttagctt 20906386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 224 - 397
Target Start/End: Original strand, 2971209 - 2971384
Alignment:
Q  224 aaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccacccttacctta 322  Q
    |||||| || |||||||||||||| ||||||||||| ||||  | ||||||||||||| ||| ||||| | ||||||| ||| |||||||||||||||||    
T  2971209 aacccttatcttcccaattttaccttaagaacagttcaattgattaattttcagaaattataaattatgactattgaaagataatcccacccttacctta 2971308  T
Q  323 gaattgcaaagacaaaa-gcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  2971309 gaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 2971384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 269 - 397
Target Start/End: Complemental strand, 14319684 - 14319554
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttctt 366  Q
    ||||||||||||| ||| ||||  || |||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||||  |||||| ||||||    
T  14319684 aattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagttctt 14319585  T
Q  367 ctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||| |||||||||||||||||| ||||    
T  14319584 ctctcttagtcttctctccttgccttagctt 14319554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 300 - 397
Target Start/End: Original strand, 14230813 - 14230911
Alignment:
Q  300 aagatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| |||||||  |||||| ||||| |||||||||||||||||||||||||| ||||    
T  14230813 aagataatcccacccttaccttagaattgcaaagacaaaaagcacgacaaatccgttcctaagttctcctctcttggtcttctctccttgccttagctt 14230911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 268 - 392
Target Start/End: Original strand, 14567203 - 14567329
Alignment:
Q  268 caattttcagaaatcatatattatcattattgaagatgatcc-cacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttct 365  Q
    ||||||||||||| |||||||||| || ||||||| | | || ||||||||||||||||||| | |||||||| ||||| ||||||  |||||| |||||    
T  14567203 caattttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagaattgtagagacaaaaagcacagcaaatccgttcctaagttct 14567302  T
Q  366 tctctcttggtcttctctccttgcctt 392  Q
    |||||||||||||| ||||||||||||    
T  14567303 tctctcttggtcttttctccttgcctt 14567329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 48 - 229
Target Start/End: Original strand, 2966741 - 2966925
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattcc-aaattcatacataacatgctattttca-tccaattatgatctacaatagcaata 145  Q
    |||||||||||||||||||| ||||||||||||| | ||| |||| |||||||| ||| | || ||||||||| |||||||| |||| |||  | ||| |    
T  2966741 aacaacaacaattcagcccattcaagcattcataca-aaacttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaacaaca 2966839  T
Q  146 cagactaggaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttc-ttcaaaatcatcattaaccct 229  Q
      || || ||||||||||||||||||||| |||||||||| |||||||| |||||  | ||||| ||||||| |||||||||||||    
T  2966840 tggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaaacatcattaaccct 2966925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 397
Target Start/End: Original strand, 31155396 - 31155524
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattc-ctaggttct 365  Q
    ||||||||||| ||||||||| || |||||| ||| |||||||||||||||||||||||||||||||   ||||| |||| |||| |||| ||| |||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaagctcaac-aatcgattctcta-gttct 31155493  T
Q  366 tctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||| ||||||||| ||||    
T  31155494 tctctcttggtcttctc-ccttgccttagctt 31155524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 48 - 382
Target Start/End: Complemental strand, 91481 - 91144
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttcatccaattatgatctacaatagcaatac 146  Q
    |||||||||||||||  | |||||| |||||||  ||||  ||| ||| ||||| ||| | || |||  ||||||||||||||||| |||  | ||||||    
T  91481 aacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatccaattatgatcaacatcaccaatac 91382  T
Q  147 agactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa---ttt 243  Q
    ||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||   |||||||||||| ||||||||   |||    
T  91381 agagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaaccctaa-tttcccaatttttt 91283  T
Q  244 taccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagacaaaagca 342  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||      
T  91282 taccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttaccttagaattgcaaaga-taaagtg 91184  T
Q  343 caacaaatcaattcctaggttcttctctcttggtcttctc 382  Q
    || |||| ||||| ||| | ||||||||||||||||||||    
T  91183 cagcaaaccaatttctaagctcttctctcttggtcttctc 91144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 48 - 382
Target Start/End: Complemental strand, 97207 - 96870
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttcatccaattatgatctacaatagcaatac 146  Q
    |||||||||||||||  | |||||| |||||||  ||||  ||| ||| ||||| ||| | || |||  ||||||||||||||||| |||  | ||||||    
T  97207 aacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatccaattatgatcaacatcaccaatac 97108  T
Q  147 agactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa---ttt 243  Q
    ||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||   |||||||||||| ||||||||   |||    
T  97107 agagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaaccctaa-tttcccaatttttt 97009  T
Q  244 taccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagacaaaagca 342  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||      
T  97008 taccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttaccttagaattgcaaaga-taaagtg 96910  T
Q  343 caacaaatcaattcctaggttcttctctcttggtcttctc 382  Q
    || |||| ||||| ||| | ||||||||||||||||||||    
T  96909 cagcaaaccaatttctaagctcttctctcttggtcttctc 96870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 48 - 397
Target Start/End: Original strand, 21710595 - 21710948
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattcc-aaattcatacataacatgctattttca-tccaattatgatctacaatagcaata 145  Q
    |||||||||||||||||||| ||||||||||||| | ||  |||| |||||||| ||| | || ||||||||| ||||||||||||| |||  | ||| |    
T  21710595 aacaacaacaattcagcccattcaagcattcataca-aagcttccaaaattcatccatcatattctattttcattccaattatgatcaacatcaacaaca 21710693  T
Q  146 cagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttc-ttcaaaatcatcattaaccctaattttcccaatttt 244  Q
     ||| || | ||||||||||| |||||| || ||||||||||||||||  ||||  | ||||| |||||||||||| | |||||||| ||||||||||||    
T  21710694 tagattaaggaatcatactaaacatcaagtataacattataaacctgatccttatactttttctttcaaaatcatcttaaaccctaaatttcccaatttt 21710793  T
Q  245 accataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagac-aaaagca 342  Q
    ||| ||||||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  21710794 accttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagca 21710893  T
Q  343 caacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    || ||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  21710894 cagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 21710948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 154 - 397
Target Start/End: Complemental strand, 20851304 - 20851057
Alignment:
Q  154 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa 251  Q
    ||||||||||||| ||||||| ||||||| |||||||||||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| |||    
T  20851304 gaaatcatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 20851205  T
Q  252 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagac-aaaagcacaacaaa 349  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  20851204 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaa 20851105  T
Q  350 tcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  20851104 tcagttcctaagttcttctctcttggtcttctctccttgccttagctt 20851057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 154 - 397
Target Start/End: Complemental strand, 20857931 - 20857684
Alignment:
Q  154 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa 251  Q
    |||| |||||||| ||||||| ||||||| |||||||||||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| |||    
T  20857931 gaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 20857832  T
Q  252 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagac-aaaagcacaacaaa 349  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  20857831 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaa 20857732  T
Q  350 tcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  20857731 tcagttcctaagttcttctctcttggtcttctctccttgccttagctt 20857684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 154 - 397
Target Start/End: Original strand, 21706159 - 21706406
Alignment:
Q  154 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa 251  Q
    |||| |||||||| ||||||| ||||||| |||||||||||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| |||    
T  21706159 gaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 21706258  T
Q  252 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagac-aaaagcacaacaaa 349  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  21706259 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaa 21706358  T
Q  350 tcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  21706359 tcagttcctaagttcttctctcttggtcttctctccttgccttagctt 21706406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 48 - 397
Target Start/End: Complemental strand, 50250 - 49894
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatac 146  Q
    ||||||| |||||||||||||||||||||||||| ||||  | | |||||||| ||| | || ||||||||||  |||||| |||| | |  | ||| |     
T  50250 aacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacat 50151  T
Q  147 agactaggaaatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaatttt 244  Q
     || || ||||||||||||||| | |||||| |||||||||||||||| |||||| | ||||||| ||||||||||||||||||| ||||||||||||||    
T  50150 ggattaagaaatcatactaatctttcaaatataacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaatttt 50051  T
Q  245 -accataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaa-agc 341  Q
     ||| ||||||||||| ||||  | |||||| |||||| | ||||||| | ||||||| ||| ||||||||||||||||||||||||||||||||| |||    
T  50050 taccttaagaacagtttaattgattaatttttagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagc 49951  T
Q  342 acaac-aaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||| |||||| |||||| |||||||||||||||| ||||||| ||||||| ||||    
T  49950 acaacaaaatcagttcctaagttcttctctcttggttttctctctttgccttagctt 49894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 154 - 397
Target Start/End: Complemental strand, 24320842 - 24320595
Alignment:
Q  154 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttc-ttcaaaatcatcattaaccctaattttcccaattttaccataa 251  Q
    ||||||||||||| ||||||| ||||||| |||||||||||  | ||  | ||||| |||||||||||| |||||||||| ||||||||||||||| |||    
T  24320842 gaaatcatactaaacatcaaagtacaacaatataaacctgatccctataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 24320743  T
Q  252 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagac-aaaagcacaacaaa 349  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  24320742 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaa 24320643  T
Q  350 tcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  24320642 tcagttcctaagttcttctctcttggtcttctctccttgccttagctt 24320595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 44477621 - 44477754
Alignment:
Q  267 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattc-ctagg 361  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  || |||||||||||||||||||  ||||||   ||| |||| | |||| |||| ||| |    
T  44477621 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagc-aatcgattctcta-g 44477718  T
Q  362 ttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||||||||||| ||||    
T  44477719 ttcttctctcttggtcttctctccttgccttagctt 44477754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 44492779 - 44492912
Alignment:
Q  267 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattc-ctagg 361  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  || |||||||||||||||||||  ||||||   ||| |||| | |||| |||| ||| |    
T  44492779 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagc-aatcgattctcta-g 44492876  T
Q  362 ttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||||||||||| ||||    
T  44492877 ttcttctctcttggtcttctctccttgccttagctt 44492912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 27940907 - 27940851
Alignment:
Q  268 caattttcagaaatcatatattatcattattgaagatgatcc-cacccttaccttag 323  Q
    |||||||||||||||||||||||| || ||||||| | | || ||||||||||||||    
T  27940907 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttag 27940851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 16147138 - 16146815
Alignment:
Q  20 gacatcatcaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc 118  Q
    |||||||  ||||||| ||||||  ||| ||||||| |||||||||||||||||||||||||| ||||  | | |||||||| ||| | || ||||||||    
T  16147138 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 16147039  T
Q  119 atc-caattatgatctacaatagcaatacagactaggaaatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaa 215  Q
    ||  |||||| |||| | |  | ||| |  || || ||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||| |||||    
T  16147038 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa 16146939  T
Q  216 tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccc 314  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||| ||||  | ||||||||||||| | ||||||| | ||||| ||||| |||||||||    
T  16146938 tcatcattaacccttattttccaaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 16146839  T
Q  315 ttaccttagaattgcaaagacaaa 338  Q
    ||||||||||||||||||||||||    
T  16146838 ttaccttagaattgcaaagacaaa 16146815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 397
Target Start/End: Original strand, 53483708 - 53483836
Alignment:
Q  272 tttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgcaaagacaaa---agcacaacaaatcaattc-ctaggttctt 366  Q
    |||||| ||| ||| ||||| |||||||| ||||  || |||||||||||||||||||| ||||||||   | |||| ||| || |||| |||| |||||    
T  53483708 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagcaa-tcgattctctag-ttctt 53483805  T
Q  367 ctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||| ||||| ||||    
T  53483806 ctctcttggtcttctctcctagccttagctt 53483836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 27906266 - 27906328
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgca 330  Q
    ||||||||||||| ||| ||||| || |||||| ||| |||||||||||| ||||||||||||    
T  27906266 aattttcagaaattatacattatgatcattgaaagataatcccacccttatcttagaattgca 27906328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 48 - 397
Target Start/End: Original strand, 135216 - 135568
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcat-ccaattatgatctacaat-agcaata 145  Q
    |||||||||||||||||||| ||||||||||||| | ||| |||| ||||||| ||| | || |||||||||| |||||| ||||| || || | ||| |    
T  135216 aacaacaacaattcagcccattcaagcattcataca-aaacttcccaattcatccatcatattctattttcattccaattttgatc-acgatcaacaaca 135313  T
Q  146 cagactaggaaatcatactaatcatcaaat-acaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattt 243  Q
     ||| || ||||||||||||| |||||||| ||||||  |||||||||| |||||| | ||||||| ||||||||||||||||||| | || | ||||||    
T  135314 tagattaagaaatcatactaa-catcaaattacaacacaataaacctgattcttacaccttttctttcaaaatcatcattaacccttaatt-ctcaattt 135411  T
Q  244 taccat-aagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaa-ag 340  Q
    |||| | |||||||||| ||||  | ||||||||||||| ||||||||| | ||||||| ||| ||| ||| ||||||||||||||||||||||||| ||    
T  135412 tacctttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatctcacgcttaccttagaattgcaaagacaaatag 135511  T
Q  341 cacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||| ||||||| |||||| | |||||||||||||||||||||||||||||| ||||    
T  135512 cacagcaaatcagttcctaagctcttctctcttggtcttctctccttgccttagctt 135568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 93 - 371
Target Start/End: Complemental strand, 25181163 - 25180880
Alignment:
Q  93 aaattcatacataacatgctattttcat-ccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaa-tacaacattataaacc 190  Q
    |||||||| ||| | || |||||||||| ||||||| |||| |||  | ||| | ||| || ||||||||||||| ||||||| ||||| | ||||||||    
T  25181163 aaattcatccatcatattctattttcattccaattacgatcaacatcaacaacatagattaagaaatcatactaaacatcaaagtacaaaaatataaacc 25181064  T
Q  191 tgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatatt 289  Q
    |||    ||  | ||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||  | ||||||||||||| |||||||    
T  25181063 tgatcaatataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatatt 25180964  T
Q  290 atcattattg-aagatgatcccacccttaccttagaattgcaaagac-aaaagcacaacaaatcaattcctaggttcttctctc 371  Q
    || | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| |||||||||||    
T  25180963 atgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctc 25180880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 154 - 369
Target Start/End: Original strand, 10460 - 10679
Alignment:
Q  154 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa 251  Q
    ||||||||||||| ||||||| ||||||| ||||||||| |  | ||  | ||||||| |||||||||| |||||||||| ||||||||||||||| |||    
T  10460 gaaatcatactaaacatcaaagtacaacaatataaaccttatccctataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 10559  T
Q  252 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagac-aaaagcacaacaaa 349  Q
    ||||| || ||||  | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||| ||||||| ||||||||| ||||    
T  10560 gaacaattcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaatttcaaagacaaaaagcacagcaaa 10659  T
Q  350 tcaattcctaggttcttctc 369  Q
    ||| |||||| || ||||||    
T  10660 tcagttcctaagtccttctc 10679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 269 - 397
Target Start/End: Complemental strand, 27207774 - 27207644
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttctt 366  Q
    ||||||||||||| ||| ||||  || |||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||||  |||||| ||||||    
T  27207774 aattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagttctt 27207675  T
Q  367 ctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||| ||||    
T  27207674 ctctcttggtcttctctccttgccttagctt 27207644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 397
Target Start/End: Original strand, 26885183 - 26885312
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttctt 366  Q
    ||||||||||||| ||| ||||  ||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||| ||||||  |||||| ||||||    
T  26885183 aattttcagaaattatacattag-attattgaaagataatcccacccttaccttagaattgcagagacaaaaagcacatcaaatccgttcctaagttctt 26885281  T
Q  367 ctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||| ||||||||||||||| ||||    
T  26885282 ctctcttggttttctctccttgccttagctt 26885312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 23168351 - 23168224
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctc 369  Q
    ||||||||||| ||| ||||| || | |||| ||| ||||||||||||||||||||||||| | ||||||||||| |||| |  | |||| |||||||||    
T  23168351 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaaacaaaagcacagcaaaaccgtccctaagttcttctc 23168252  T
Q  370 tcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||| ||||    
T  23168251 tcttggtcttctctccttgccttagctt 23168224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 23579608 - 23579481
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctc 369  Q
    ||||||||||| ||| ||||| || | |||| ||| ||||||||||||||||||||||||| | ||||||||||| |||| |  | |||| |||||||||    
T  23579608 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaaacaaaagcacagcaaaaccgtccctaagttcttctc 23579509  T
Q  370 tcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||| ||||    
T  23579508 tcttggtcttctctccttgccttagctt 23579481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 27366561 - 27366472
Alignment:
Q  310 cacccttaccttagaattgcaaagacaaa---agcacaacaaatcaattcctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||||   | |||| ||| || |||||   |||||||||||||||||||||||||||||||| ||||    
T  27366561 cacccttaccttagaattgcaaagacaaagaaaacacagcaa-tcgattccctagttcttctctcttggtcttctctccttgccttagctt 27366472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 5706036 - 5705947
Alignment:
Q  310 cacccttaccttagaattgcaaagacaaa---agcacaacaaatcaattc-ctaggttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||| ||||||||   | |||| ||| || |||| |||| ||||||||||||||||||||||||| ||||| ||||    
T  5706036 cacccttaccttagaattgcgaagacaaagaaaacacagcaa-tcgattctctag-ttcttctctcttggtcttctctcctagccttagctt 5705947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 175 - 397
Target Start/End: Complemental strand, 2062 - 1837
Alignment:
Q  175 tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccat-aagaacagttaaattactcaatt 272  Q
    |||||||  |||||||| | |||||| | ||||||| ||||||||||||||||||| | || |||||||||||  | |||||||||| ||||  | ||||    
T  2062 tacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattttactttcaagaacagttcaattgattaatt 1964  T
Q  273 ttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttcttctct 370  Q
    ||||||||| ||||||||| | ||||||| ||| ||||||||||||||||| |||||||||||||||| ||||| ||||||  |||||| ||||||||||    
T  1963 ttcagaaattatatattatgactattgaaagataatcccacccttaccttacaattgcaaagacaaaaagcacagcaaatccgttcctaagttcttctct 1864  T
Q  371 cttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||| ||||    
T  1863 cttggtcttctctccttgccttagctt 1837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 141 - 328
Target Start/End: Complemental strand, 16247 - 16059
Alignment:
Q  141 caatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa 240  Q
    ||||| ||| ||| |||||||||||||||||||||||||||| || ||||||| |||| | ||||||||||||||||||||||||||||||  |||| |     
T  16247 caatatagattagaaaatcatactaatcatcaaatacaacatcatgaacctgattcttgcacattttcttcaaaatcatcattaaccctaa-attccaat 16149  T
Q  241 ttttaccataagaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattg 328  Q
    ||||| | ||| |||||||||||| | | | ||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||    
T  16148 ttttatcttaaaaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattg 16059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 48 - 328
Target Start/End: Original strand, 9113 - 9396
Alignment:
Q  48 aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcat-ccaattatgatctacaat-agcaata 145  Q
    |||||||||||||||||||| ||||||| ||||| | ||| |||| ||||||| ||| | || |||||||| | |||||| ||||| ||||| | ||| |    
T  9113 aacaacaacaattcagcccattcaagcaatcataca-aaacttcccaattcatccatcatattctattttcgttccaattctgatc-acaatcaacaaca 9210  T
Q  146 cagactaggaaatcatactaatcatcaaat-acaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattt 243  Q
     ||| |  ||||||||||||| |||||||| ||||||  |||||||| | |||||| | ||||||| ||||||||||||||||||| | || ||||||||    
T  9211 tagattgagaaatcatactaaacatcaaattacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattt 9309  T
Q  244 taccat-aagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattg 328  Q
    |||  | |||||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||    
T  9310 tacttttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 9396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 10252 - 10125
Alignment:
Q  267 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttc 364  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  |||||||||||||||||||||| | |||||||| ||||| ||||||  |||||| ||||    
T  10252 tcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttc 10153  T
Q  365 ttctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||||||||||||||    
T  10152 ttctctcttggtcttctctccttgcctt 10125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 1582 - 1455
Alignment:
Q  267 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttc 364  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  |||||||||||||||||||||| | |||||||| ||||| ||||||  |||||| ||||    
T  1582 tcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttc 1483  T
Q  365 ttctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||||||||||||||    
T  1482 ttctctcttggtcttctctccttgcctt 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 10239 - 10364
Alignment:
Q  269 aattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttctt 366  Q
    ||||||||||||| | ||||||| ||||||| ||||| ||| ||||||||||||||||||| | |||||||| ||||| ||||||  |||||| ||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttagaattgtagagacaaaaagcacagcaaatccgttcctaagttctt 10338  T
Q  367 ctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||||||||||||    
T  10339 ctctcttggtcttctctccttgcctt 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 397
Target Start/End: Complemental strand, 493082 - 492953
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttctt 366  Q
    ||||||||||||| ||| ||||  ||||||||| ||| ||| ||||||||||||||||||||| |||||||| ||||| ||||||  |||||| ||||||    
T  493082 aattttcagaaattatacattag-attattgaaagataatctcacccttaccttagaattgcagagacaaaaagcacagcaaatccgttcctaagttctt 492984  T
Q  367 ctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||| ||||    
T  492983 ctctcttggtcttctctccttgccttagctt 492953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 397
Target Start/End: Complemental strand, 5912 - 5781
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattcctaggttc 364  Q
    ||||||||||||| ||||||||| || |||||| ||| |||||||||||||||||||||||||||||||   ||| |||| | ||||  ||||   ||||    
T  5912 aattttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaaacacagc-aatcggttccctagttc 5814  T
Q  365 ttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||| ||||    
T  5813 ttctctcttggtcttctctccttgccttagctt 5781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 271 - 391
Target Start/End: Original strand, 6 - 125
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaagcacaacaaatcaattcctaggttcttctc 369  Q
    ||||||||||||||||||||  | ||||||| ||| |||||||||||||||||||||||||||||  ||||  || ||| |||||||||| | |||||||    
T  6 ttttcagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgcaaaga-taaagtgcagcaagtcaattcctaagctcttctc 104  T
Q  370 tcttggtcttctctccttgcct 391  Q
    ||||||||||||| ||||||||    
T  105 tcttggtcttctc-ccttgcct 125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 397
Target Start/End: Complemental strand, 3457 - 3327
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagacaaaa-gcacaacaaatcaattcctaggttctt 366  Q
    ||||||||||||| ||||||||   | |||||| ||| ||  |||||||||||||||||||||||||||||| ||||  ||||||  |||||| |||||     
T  3457 aattttcagaaattatatattaaattcattgaaagataatatcacccttaccttagaattgcaaagacaaaaagcacggcaaatccgttcctaagttctc 3358  T
Q  367 ctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||| ||||||| ||||    
T  3357 ctctcttggtcttctctcgttgccttagctt 3327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 13947 - 13819
Alignment:
Q  271 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattcctaggttctt 366  Q
    ||||||||||| ||||||||| || |||||| ||| |||||||||||||||||||||||||||||||   ||||| ||||||   | || ||| ||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaagctcaacaatcgattttcta-gttctt 13849  T
Q  367 ctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||| ||||||||| ||||    
T  13848 ctctcttggtcttctc-ccttgccttagctt 13819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 111684 - 111817
Alignment:
Q  267 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgcaaagaca---aaagcacaacaaatcaattc-ctagg 361  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  || |||||||||||||||||||| ||||||   ||| |||| | |||| |||| ||| |    
T  111684 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctcta-g 111781  T
Q  362 ttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||||||||||| ||||    
T  111782 ttcttctctcttggtcttctctccttgccttagctt 111817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 321
Target Start/End: Original strand, 12836 - 13019
Alignment:
Q  151 taggaaatcatactaatcat-caaatacaacattataaacct-gaatctt-acgcattttcttcaaaatcat-cattaaccctaattttccc--aatttt 244  Q
    |||||||||||||||||||| ||||||||||||||||||||| || |||| || ||||| ||||| |||||| |||||||||||| ||||||  | ||||    
T  12836 taggaaatcatactaatcatacaaatacaacattataaacctagattcttaacacatttccttcagaatcatacattaaccctaaatttccccaattttt 12935  T
Q  245 acc-ataagaacagttaaatt----actcaattttcagaaatcatatattatcattattg--aagatgatcccacccttacctt 321  Q
    |||  |||||||||||||| |    | | | |||| |||||||||||||||  | |||||  ||||| ||||||||||||||||    
T  12936 acctttaagaacagttaaaatttagattaattttttagaaatcatatattagaactattgtaaagataatcccacccttacctt 13019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 23624 - 23562
Alignment:
Q  269 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgca 330  Q
    ||||||||||||| ||| ||||| || ||| || ||| |||||||||||||||||||||||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgca 23562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 1388 - 1425
Alignment:
Q  208 cttcaaaatcatcattaaccctaattttcccaatttta 245  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  1388 cttcaaaatcagcattaaccctaatttttccaatttta 1425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 45234 - 45198
Alignment:
Q  361 gttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  45234 gttcttctctcttggtcttctctcctagccttagctt 45198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3284 times since January 2019
Visitors: 4031