View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_high_17 (Length: 334)

Name: NF0669_high_17
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_high_17
NF0669_high_17
[»] chr5 (1 HSPs)
chr5 (38-323)||(32562374-32562660)
[»] chr4 (2 HSPs)
chr4 (31-212)||(53690819-53690999)
chr4 (247-323)||(29317651-29317728)
[»] scaffold0047 (1 HSPs)
scaffold0047 (167-318)||(48691-48841)
[»] chr7 (2 HSPs)
chr7 (167-323)||(43502616-43502773)
chr7 (170-323)||(39069910-39070065)
[»] chr8 (1 HSPs)
chr8 (234-323)||(32210840-32210929)
[»] chr2 (5 HSPs)
chr2 (234-323)||(5966559-5966648)
chr2 (234-323)||(37780719-37780808)
chr2 (247-323)||(16424439-16424515)
chr2 (234-323)||(22986156-22986245)
chr2 (253-319)||(25866631-25866697)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 38 - 323
Target Start/End: Original strand, 32562374 - 32562660
Alignment:
Q  38 tatatgtctttgatccaaatattagaatcaattagattcaaatttaatgaatttgaattgaatttttcttatatagttgaaaatacatttaacacttaaa 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32562374 tatatgtctttgatccaaatattagaatcaattagattcaaatttaatgaatttgaattgaatttttcttatatagttgaaaatacatataacacttaaa 32562473  T
Q  138 taatatctttcatagccccttannnnnnn-atttggaacttatttatgtattaatgaagatgccgaatcaataaaagaaaattcaatgatttttattaaa 236  Q
    ||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  32562474 taatatctttcatagacccttattttttttatttggaacttatttatgtattaatgaagatgccgaatcaataaaagaaaatttaatgattattattaaa 32562573  T
Q  237 aagatctgctacaatcatttgtttgcttcactaatctttgaactgtatttttctttcttcatattctataactatttaccactctct 323  Q
    || |||| | ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||    
T  32562574 aaaatctacgacaatcatttgtttgcttcactaatctttgaaccgtctctttctttcttcatattctaaaactatttaccactctct 32562660  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 53690999 - 53690819
Alignment:
Q  31 atgtaagtatatgtctttgatccaaatattagaatcaattagattcaaatttaatgaatttgaattgaatttttcttatatagttgaaaatacatttaac 130  Q
    ||||||| ||| |||||||||||||||||||| |||||||  ||||||||||| |||||||| |||  |  ||| ||||||||||||||||| || ||||    
T  53690999 atgtaagcataggtctttgatccaaatattagcatcaattctattcaaatttattgaatttgtattacaaattt-ttatatagttgaaaatatatgtaac 53690901  T
Q  131 acttaaataatatctttcatagccccttannnnnnnatttggaacttatttatgtattaatgaagatgccgaatcaataaaa 212  Q
    |||||||||||||||||||||| ||| ||       |||||||||||||| |||||||||||||| || |||||||||||||    
T  53690900 acttaaataatatctttcatagacccctaattttttatttggaacttattcatgtattaatgaagctgtcgaatcaataaaa 53690819  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 29317651 - 29317728
Alignment:
Q  247 acaatcatttgtttgcttcactaatctttgaactgtatttttctttcttcata-ttctataactatttaccactctct 323  Q
    ||||||||||||||| || |||||||||| ||||   |||||||||||||||| ||| ||||||||||| ||||||||    
T  29317651 acaatcatttgtttgttttactaatctttcaactacctttttctttcttcatacttccataactatttatcactctct 29317728  T

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Target: scaffold0047 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 48691 - 48841
Alignment:
Q  167 atttggaacttatttatgtattaatgaagatgccgaatcaataaaagaaaattcaatgatttttatta-aaaagatctgctacaatcatttgtttgcttc 265  Q
    ||||||||||||||||||||||||||||| || |||||||||| || | | |||||||||| |||||| |||| ||||  | ||| ||||||||| ||||    
T  48691 atttggaacttatttatgtattaatgaagctgtcgaatcaatacaa-atatttcaatgattgttattataaaaaatctaat-caaacatttgttttcttc 48788  T
Q  266 actaatctttgaactgtatttttctttcttcatattctataactatttaccac 318  Q
    ||| ||||||  |||   ||||||||||||||||||| |||||||||||||||    
T  48789 acttatctttcgactacctttttctttcttcatattccataactatttaccac 48841  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 323
Target Start/End: Complemental strand, 43502773 - 43502616
Alignment:
Q  167 atttggaacttatttatgtattaatgaagatgccgaatcaataaaagaaaattcaatgatttttat--taaaaagatctgctacaatcatttgtttgctt 264  Q
    |||||||||| |||||||||||||||||| |||||||||||||||| | | |||||||||| ||||  |||||| |||| |  ||| ||||||||| |||    
T  43502773 atttggaactcatttatgtattaatgaagctgccgaatcaataaaa-atatttcaatgattgttattataaaaaaatctacgtcaaacatttgttttctt 43502675  T
Q  265 cactaatctttgaactgtatttttctttcttcatattctataactatttaccactctct 323  Q
    || | |||||| |||||   |||||||||||| ||||| ||| |||||||||| |||||    
T  43502674 cattgatctttcaactgccattttctttcttcgtattccatatctatttaccattctct 43502616  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 323
Target Start/End: Complemental strand, 39070065 - 39069910
Alignment:
Q  170 tggaacttatttatgtattaatgaagatgccgaatcaataaaagaaaattcaatgatttttat--taaaaagatctgctacaatcatttgtttgcttcac 267  Q
    ||||||| |||||||||||||||||| |||||||||||||| | | | |||||||||| ||||  |||||| |||| |  ||| ||||||||| |||||     
T  39070065 tggaactcatttatgtattaatgaagctgccgaatcaataata-atatttcaatgattgttattataaaaaaatctacgtcaaacatttgttttcttcat 39069967  T
Q  268 taatctttgaactgtatttttc-tttcttcatattctataactatttaccactctct 323  Q
    | |||||| |||||  |||||| ||||||||||||| ||| ||||||||||||||||    
T  39069966 tgatctttcaactgcctttttcttttcttcatattccatatctatttaccactctct 39069910  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 32210840 - 32210929
Alignment:
Q  234 aaaaagatctgctacaatcatttgtttgcttcactaatctttgaactgtatttttctttcttcatattctataactatttaccactctct 323  Q
    ||||| || ||| ||||||||||  ||||||||||||||||| ||||   ||||||||| ||||||||| |||| |||||||||||||||    
T  32210840 aaaaaaatatgcgacaatcattttgttgcttcactaatctttcaactacctttttcttttttcatattcaataattatttaccactctct 32210929  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 5966648 - 5966559
Alignment:
Q  234 aaaaagatctgctacaatcatttgtttgcttcactaatctttgaactgtatttttctttcttcatattctataactatttaccactctct 323  Q
    ||||| || ||| ||||||||||  ||||||||||||||||| ||||   ||||||||| ||||||||| |||| |||||||||||||||    
T  5966648 aaaaaaatatgcgacaatcattttgttgcttcactaatctttcaactacctttttcttttttcatattcaataattatttaccactctct 5966559  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 37780719 - 37780808
Alignment:
Q  234 aaaaagatctgctacaatcatttgtttgcttcactaatctttgaactgtatttttctttcttcatattctataactatttaccactctct 323  Q
    ||||| || ||| ||||||||||  ||||||||||||||||| ||||   ||||||||| ||||||||| |||| |||||||||||||||    
T  37780719 aaaaaaatatgcgacaatcattttgttgcttcactaatctttcaactacctttttcttttttcatattcaataattatttaccactctct 37780808  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 16424515 - 16424439
Alignment:
Q  247 acaatcatttgtttgcttcactaatctttgaactgtatttttctttcttcatattctataactatttaccactctct 323  Q
    ||||||||||||||| |||| |||| ||| ||||   ||||||||||||||||||| ||||||||||| ||||||||    
T  16424515 acaatcatttgtttgtttcattaattttttaactacctttttctttcttcatattccataactatttatcactctct 16424439  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 22986245 - 22986156
Alignment:
Q  234 aaaaagatctgctacaatcatttgtttgcttcactaatctttgaactgtatttttctttcttcatattctataactatttaccactctct 323  Q
    ||||| || ||| ||||||||||   |||||||||||||||| ||||   ||||||||| ||||||||| |||| |||||||||||||||    
T  22986245 aaaaaaatatgcgacaatcattttgctgcttcactaatctttcaactacctttttcttttttcatattcaataattatttaccactctct 22986156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 25866697 - 25866631
Alignment:
Q  253 atttgtttgcttcactaatctttgaactgtatttttctttcttcatattctataactatttaccact 319  Q
    ||||||||||||||||||||||| |||| | |||| |||| ||||||||   |||||||||||||||    
T  25866697 atttgtttgcttcactaatctttcaactattttttccttttttcatatttcctaactatttaccact 25866631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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