View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_high_22 (Length: 318)
Name: NF0669_high_22
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 30884009 - 30884294
Alignment:
| Q |
22 |
catcatcaacgccacaaagacaccagcagtaaatggatatagaggacctagatcacctgctggccttgtggagcgaacaacttcaccgaccttccacatc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30884009 |
catcatcaacgccacaaagacaccagcagtaaatggatatagaggacctagatcacctgctggccttgtagagcgaacaacttcaccgaccttccacatc |
30884108 |
T |
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| Q |
122 |
cgggtctgatcaattttgcccatgggaaatgcaggcagaccctctttctcctgtaaaacacggaaataatttgaagtcctccacataaaggccaactcta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30884109 |
cgggtctgatcaattttgcccatgggaaatgcaggcagaccctctttctcctgtaaaacacggaaataatttgaagtcctccacataaaggccaactcta |
30884208 |
T |
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| Q |
222 |
aatgggaaatagatatgcacttacgtaaaagcgacgaccagccaaaacaacactacgaatctcactaccactggctacatcttcat |
307 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30884209 |
aatgtaaaatagatatgcacttacgtaaaagcgacgaccagccaaaacaacactacgaatctcactaccactggctacatcttcat |
30884294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 39344072 - 39343920
Alignment:
| Q |
22 |
catcatcaacgccacaaagacaccagcagtaaatggatatagaggacctagatcacctgctggccttgtggagcgaacaacttcaccgaccttccacatc |
121 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||||| || ||| |||| |||||||| || || || || ||| || || ||||||||||| |
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| T |
39344072 |
catcatcagtgccacaaagacaccagcggtaaaaggatataatgggccttgatctcctgctggtctagtagaccggacacgctcgccaaccttccacatg |
39343973 |
T |
|
| Q |
122 |
cgggtctgatcaattttgcccatgggaaatgcaggcagaccctctttctcctg |
174 |
Q |
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| T |
39343972 |
cgggtctggacaattttacccatgggaaatgcaggtagaccttctttctcctg |
39343920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 39343850 - 39343779
Alignment:
| Q |
236 |
atgcacttacgtaaaagcgacgaccagccaaaacaacactacgaatctcactaccactggctacatcttcat |
307 |
Q |
| |
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|||| ||||| ||||| |||| ||||||| ||||||| ||||||||||||| |||||||||||||| |||| |
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| T |
39343850 |
atgcgcttacataaaaatgacgcccagccagaacaacattacgaatctcactgccactggctacatcctcat |
39343779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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