View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0669_high_23 (Length: 318)
Name: NF0669_high_23
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_high_23 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 74 - 318
Target Start/End: Complemental strand, 17725188 - 17724944
Alignment:
| Q |
74 |
gacatcatcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacga |
173 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725188 |
gacatcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacga |
17725089 |
T |
|
| Q |
174 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaata |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725088 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaatccgaggagcaatacgaaacaaaggttcatcagggaacaata |
17724989 |
T |
|
| Q |
274 |
tggaatggggaaccttgttttggattgcagatgatggcattctat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17724988 |
tggaatggggaaccttgttttggattgcagatgatggcattctat |
17724944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 74 - 318
Target Start/End: Complemental strand, 13039793 - 13039549
Alignment:
| Q |
74 |
gacatcatcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacga |
173 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13039793 |
gacatcagcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattttacga |
13039694 |
T |
|
| Q |
174 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaata |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13039693 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaatccgaggagcaatacgaaacaaaggttcatcagggaacaata |
13039594 |
T |
|
| Q |
274 |
tggaatggggaaccttgttttggattgcagatgatggcattctat |
318 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13039593 |
tggaatggggaaccttgttttggattacagatgatggcattctat |
13039549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 20705321 - 20705207
Alignment:
| Q |
178 |
acaatttatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacaatatgga |
277 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| ||||| ||||||||| || ||| |||| ||||||||||||| | ||| || || ||||| |
|
|
| T |
20705321 |
acaacttatctaaacctggaaaaagatcatgaacaaaacaagtacttccaaaaacacgtggattaatatgaaacaaaggttctttaggaaataagatgga |
20705222 |
T |
|
| Q |
278 |
atggggaaccttgtt |
292 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
20705221 |
gtgaggaactttgtt |
20705207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 11025843 - 11025985
Alignment:
| Q |
74 |
gacatcatcagacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacga |
173 |
Q |
| |
|
||||||| || |||||||||||| ||| || || |||||||||||| ||||||||| | ||||||||||| || |||||||||||||||| ||||||| |
|
|
| T |
11025843 |
gacatcaacaaacatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaatcgctgagaaagacacatttaactgcacga |
11025942 |
T |
|
| Q |
174 |
gcacacaatttatctaaacctggagtaagatcatgaacaaagc |
216 |
Q |
| |
|
||| ||| ||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
11025943 |
gcaaacattttatctaaaccttgagtaagatcatgaataaagc |
11025985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2867 times since January 2019
Visitors: 4017