View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_high_24 (Length: 308)
Name: NF0669_high_24
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_high_24 |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 23179949 - 23180236
Alignment:
| Q |
19 |
ggacatcatcaatatgctcataatcgttaaagtaaaccggttgttcgcctggaatatgaaagaacaacctttcaactgctggcttccgaccatgtattgg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23179949 |
ggacatcatcaatatgctcataatcgttaaagtaaaccggttgttcgcctggaatatgaaagaacaacctttcaactgctggcttccgaccatgtattgg |
23180048 |
T |
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| Q |
119 |
aaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatcaatgttaccactttgagttgaatctctg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180049 |
aaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatcaatgttaccactttgagttgaatctctg |
23180148 |
T |
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| Q |
219 |
tcttgtgttggatcaacaacggctgttatcctaccataacctttatttatgtgcttgaataagtacttaatcgatgcacctatgctac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
23180149 |
tcttgtgttggatcaacaacggctgttatcctaccataacctttatttatgtgcttgaataagtacttaatcgatgcacttttgctac |
23180236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 116392 - 116511
Alignment:
| Q |
74 |
atgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaag |
173 |
Q |
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||||||||||| | ||| || |||||||| | |||||| |||||||| || || |||||||||| |||||||| ||| || | |||||||||||| || |
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| T |
116392 |
atgaaagaacatacgttcgaccgctggctttctaccatgaattggaaaagagaacattctccaacttgcttcacttggagaaatatacctacaatctaaa |
116491 |
T |
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| Q |
174 |
tattgtttgatctcatcaat |
193 |
Q |
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||||| |||||||||||||| |
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| T |
116492 |
tattgcttgatctcatcaat |
116511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 151506 - 151624
Alignment:
| Q |
72 |
atatgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaa |
171 |
Q |
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||||||||||||| || ||||||||| || || || || || ||||| || || ||||||||||||| ||||||| ||| || | |||||||||||||| |
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| T |
151506 |
atatgaaagaacatccgttcaactgcaggtttacggccgtgaattgggaaagagtaaattctccaacacgcttcacttggagaaatatacctacaatcaa |
151605 |
T |
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| Q |
172 |
agtattgtttgatctcatc |
190 |
Q |
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|||||||||||| ||||| |
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| T |
151606 |
ggtattgtttgatttcatc |
151624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 18060486 - 18060604
Alignment:
| Q |
72 |
atatgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaa |
171 |
Q |
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||||||||||||| || ||||||||| || || || || || ||||| || || ||||||||||||| ||||||| ||| || | |||||||||||||| |
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| T |
18060486 |
atatgaaagaacatccgttcaactgcaggtttacggccgtgaattgggaaagagtaaattctccaacacgcttcacttggagaaatatacctacaatcaa |
18060585 |
T |
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| Q |
172 |
agtattgtttgatctcatc |
190 |
Q |
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|||||||||||| ||||| |
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| T |
18060586 |
ggtattgtttgatttcatc |
18060604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 22065434 - 22065490
Alignment:
| Q |
107 |
accatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacct |
163 |
Q |
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|||||| |||||||||||||| |||||||||| |||||||| ||| || |||||||| |
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| T |
22065434 |
accatgaattggaaatgaaaacattctccaacttgcttcacttggagaaacatacct |
22065490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 22072342 - 22072406
Alignment:
| Q |
128 |
aattctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatcaa |
192 |
Q |
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||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| || ||||||| |
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| T |
22072342 |
aattctccaacatgcctcacttggtgatatatacctacaatccaagtattgttttatttcatcaa |
22072406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 124877 - 124995
Alignment:
| Q |
74 |
atgaaagaacaacctttcaactgctggcttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaag |
173 |
Q |
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||||||||||| | ||||| ||||| || ||||||||||| | || ||||| |||||||||||||| |||| |||||| ||||| ||||||| || | |
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| T |
124877 |
atgaaagaacatgcgctcaacagctggtttacgaccatgtatggagaaagaaaatattctccaacatgcctcacttggtgaaacatatctacaataaatg |
124976 |
T |
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| Q |
174 |
tattgtttgatctcatcaa |
192 |
Q |
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|| |||||||| ||||||| |
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| T |
124977 |
tactgtttgatttcatcaa |
124995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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