View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0669_high_29 (Length: 291)
Name: NF0669_high_29
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_high_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 3674845 - 3675120
Alignment:
| Q |
9 |
agcagagagatgcaagaaagctttggaaaatattcactttgaccaatgtcttgccagtccaatatctcgtgccaaggttaggaagcggtgaaatttaatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3674845 |
agcagagagatgcaagaaagctttggaaaatattcactttgaccaatgtcttgccagtccaatatctcgtgccaaggttaggaagcggtgaaatttaatt |
3674944 |
T |
|
| Q |
109 |
ctcgagcatgctaatactttttctgatagtcattactggttttggatgtttgatgtagcaaactgctgaaattatatggcaaggaagggaaaaaccattg |
208 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3674945 |
cttgagcatgctaatactttttctgatagtcataactggttttggatgtttgatgtagcaaactgctgaaattatatggcaaggaagggaaaaaccattg |
3675044 |
T |
|
| Q |
209 |
gtttacattgattcacttaaagaaatatctctctatcaccttgaaggattgaaaaatggtgagcctgtctctgctc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3675045 |
gtttacattgattcacttaaagaaatatctctctatcaccttgaaggattgaaaaatggtgagcctgtctctgctc |
3675120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 15744998 - 15744762
Alignment:
| Q |
11 |
cagagagatgcaagaaagctttggaaaatattcactttgaccaatgtcttgccagtccaatatctcgtgccaaggttaggaagcggtgaaatttaattct |
110 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
15744998 |
cagagatatccaagaaagctttggaaaatattcactttgaccaatgtcttgccagtccaatacctcgtgccaaggttaggccgcagtgaaatttaattct |
15744899 |
T |
|
| Q |
111 |
cgagcatgctaatactttttctgatagtca-------ttactggttttggatgtttgatgtagcaaactgctgaaattatatggcaaggaagggaaaaac |
203 |
Q |
| |
|
||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
15744898 |
cgagcatgctaatacttttactgatagtcaatttatttaactggttttggatgtttgatgtagcaaactactgaaattacatggcaaggaagggaaaaac |
15744799 |
T |
|
| Q |
204 |
cattggtttacattgattcacttaaagaaatatctct |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15744798 |
cattggtttacattgattcacttaaagaaatatctct |
15744762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 19546172 - 19546248
Alignment:
| Q |
155 |
tgtttgatgtagcaaactgctgaaattatatggcaaggaagggaaaaaccattggtttacattgattcacttaaagaaatat |
236 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| || ||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
19546172 |
tgtttgatgtagcaaacttctgaaattacatggcaagg--gg---aaaccatcggtttacattgattcaaatgaagaaatat |
19546248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 1571313 - 1571549
Alignment:
| Q |
11 |
cagagagatgcaagaaagctttggaaaatattcactttgaccaatgtcttgccagtccaatatctcgtgccaaggttaggaagcggtgaaatttaattct |
110 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
1571313 |
cagagatatccaagaaagctttggaaaatattcactttgaccaatgtcttgccagtccaatacctcgtgccaaggttaggccgcagtgaaatttaattct |
1571412 |
T |
|
| Q |
111 |
cgagcatgctaatactttttctgatagtca-------ttactggttttggatgtttgatgtagcaaactgctgaaattatatggcaaggaagggaaaaac |
203 |
Q |
| |
|
||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
1571413 |
cgagcatgctaatacttttactgatagtcaatttatttaactggttttggatgtttgatgtagcaaactactgaaattacatggcaaggaagggaaaaac |
1571512 |
T |
|
| Q |
204 |
cattggtttacattgattcacttaaagaaatatctct |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1571513 |
cattggtttacattgattcacttaaagaaatatctct |
1571549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3036 times since January 2019
Visitors: 4024