View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_high_42 (Length: 228)

Name: NF0669_high_42
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_high_42
NF0669_high_42
[»] chr2 (4 HSPs)
chr2 (1-228)||(3675284-3675511)
chr2 (14-52)||(5738536-5738574)
chr2 (114-193)||(36031041-36031120)
chr2 (14-47)||(10132696-10132729)
[»] chr3 (3 HSPs)
chr3 (19-110)||(40140999-40141090)
chr3 (13-52)||(26634787-26634826)
chr3 (23-52)||(52017637-52017666)
[»] chr5 (4 HSPs)
chr5 (114-191)||(40553595-40553672)
chr5 (13-83)||(27719562-27719632)
chr5 (12-80)||(31594630-31594698)
chr5 (14-105)||(4854279-4854368)
[»] chr1 (2 HSPs)
chr1 (20-93)||(42803096-42803169)
chr1 (17-57)||(6774303-6774343)
[»] chr6 (2 HSPs)
chr6 (21-57)||(32576199-32576235)
chr6 (14-44)||(18813282-18813312)
[»] chr4 (3 HSPs)
chr4 (26-146)||(41571454-41571575)
chr4 (14-57)||(42403349-42403392)
chr4 (14-44)||(48249630-48249660)
[»] chr8 (1 HSPs)
chr8 (14-49)||(37080232-37080267)
[»] scaffold0050 (1 HSPs)
scaffold0050 (125-202)||(58108-58185)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3675511 - 3675284
Alignment:
Q  1 tcatcaatatccaaataaatcatcaatttagtccctaaactatcattctctctccaactttacctctaaactatataaatatagtaaatagtccttatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675511 tcatcaatatccaaataaatcatcaatttagtccctaaactatcattctctctccaactttacctctaaactatataaatatagtaaatagtccttatag 3675412  T
Q  101 tatatgaaatgtaaattcagtccctgctattaagatgttagggactgaactgacaaatttttatatacttcaaggactaaattgatagatttttatagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3675411 tatatgaaatgtaaattcagtccctgctattaagatgttagggactgaactgacaaatttttatatacttcaaggactaaactgatagatttttatagtt 3675312  T
Q  201 taaggactaaattggtgggagtgtgata 228  Q
    ||||||||||||||||||||||||||||    
T  3675311 taaggactaaattggtgggagtgtgata 3675284  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 5738536 - 5738574
Alignment:
Q  14 aataaatcatcaatttagtccctaaactatcattctctc 52  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  5738536 aataaaccatcaatttagtccctaaactatcattctctc 5738574  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 36031120 - 36031041
Alignment:
Q  114 aattcagtccctgctattaagatgttagggactgaactgacaaatttttatatacttcaaggactaaattgatagatttt 193  Q
    |||| ||||| |||||||||||||||||| ||| || ||||   |||| |||||||| | ||||||||||||| ||||||    
T  36031120 aatttagtccatgctattaagatgttaggaactaaattgactgtttttcatatactttagggactaaattgatggatttt 36031041  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 10132729 - 10132696
Alignment:
Q  14 aataaatcatcaatttagtccctaaactatcatt 47  Q
    |||||| |||||||||||||||||||||||||||    
T  10132729 aataaaccatcaatttagtccctaaactatcatt 10132696  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 40141090 - 40140999
Alignment:
Q  19 atcatcaatttagtccctaaactatcattctctctccaactttacctctaaactatataaatatagtaaatagtccttatagtatatgaaat 110  Q
    ||||||||||||||||   || ||||| ||||||||||| || ||| |||||||||||||||||| ||| |||| |||| ||||||||||||    
T  40141090 atcatcaatttagtccaccaagtatcactctctctccaatttaacccctaaactatataaatatattaagtagttcttaaagtatatgaaat 40140999  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 26634826 - 26634787
Alignment:
Q  13 aaataaatcatcaatttagtccctaaactatcattctctc 52  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  26634826 aaataaatcattaatttagtccctaaactatcactctctc 26634787  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 52017637 - 52017666
Alignment:
Q  23 tcaatttagtccctaaactatcattctctc 52  Q
    ||||||||||||||||||||||||||||||    
T  52017637 tcaatttagtccctaaactatcattctctc 52017666  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 40553595 - 40553672
Alignment:
Q  114 aattcagtccctgctattaagatgttagggactgaactgacaaatttttatatacttcaaggactaaattgatagatt 191  Q
    ||||||||||||| ||||||||||||||||||| ||||||| || ||| | |||||  | ||||||||||||||||||    
T  40553595 aattcagtccctgatattaagatgttagggactaaactgacgaagtttcaaatactaaagggactaaattgatagatt 40553672  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 27719562 - 27719632
Alignment:
Q  13 aaataaatcatcaatttagtccctaaactatcattctctctccaactttacctctaaactatataaatata 83  Q
    ||||||| |||||| |||||||||| ||||||||||||||||||| ||   | ||||||||||||||||||    
T  27719562 aaataaagcatcaacttagtccctatactatcattctctctccaatttagtccctaaactatataaatata 27719632  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 31594630 - 31594698
Alignment:
Q  12 caaataaatcatcaatttagtccctaaactatcattctctctccaactttacctctaaactatataaat 80  Q
    |||| ||| |||| ||||||||| |||| ||||||||||||||||| |||| ||||||| |||||||||    
T  31594630 caaacaaaccatcgatttagtccttaaagtatcattctctctccaattttatctctaaagtatataaat 31594698  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 4854368 - 4854279
Alignment:
Q  14 aataaatcatcaatttagtccctaaactatcattctctctccaactttacctctaaactatataaatatagtaaatagtccttatagtatat 105  Q
    |||||| |||||||||| ||| |||| |||||  |||||||||| ||   | ||||| |||||||||||| ||||||||||||  |||||||    
T  4854368 aataaaccatcaatttaatccataaagtatca--ctctctccaatttggtccctaaagtatataaatataataaatagtccttgcagtatat 4854279  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 42803096 - 42803169
Alignment:
Q  20 tcatcaatttagtccctaaactatcattctctctccaactttacctctaaactatataaatatagtaaatagtc 93  Q
    |||| |||||| ||| ||||||||||||||||| |||| ||   |||||||||||| ||||||| |||||||||    
T  42803096 tcatgaatttaatccataaactatcattctctcaccaatttagtctctaaactatacaaatatattaaatagtc 42803169  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 6774303 - 6774343
Alignment:
Q  17 aaatcatcaatttagtccctaaactatcattctctctccaa 57  Q
    ||||||||||||||||| ||||| ||||||| |||||||||    
T  6774303 aaatcatcaatttagtctctaaagtatcattttctctccaa 6774343  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 32576235 - 32576199
Alignment:
Q  21 catcaatttagtccctaaactatcattctctctccaa 57  Q
    ||||||||||||||||||||||||| |||||||||||    
T  32576235 catcaatttagtccctaaactatcagtctctctccaa 32576199  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 18813312 - 18813282
Alignment:
Q  14 aataaatcatcaatttagtccctaaactatc 44  Q
    |||||||||||||||||||||||||||||||    
T  18813312 aataaatcatcaatttagtccctaaactatc 18813282  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 41571575 - 41571454
Alignment:
Q  26 atttagtccctaaactatcattctctctccaactttacctct-aaactatataaatatagtaaatagtccttatagtatatgaaat--gtaaattcagtc 122  Q
    |||||||||||||  |||||| ||||||| || |||| |||| ||||||| ||| || | |||||||| |||||||||||| ||||  || || | ||||    
T  41571575 atttagtccctaatttatcatcctctctctaa-tttagctcttaaactatctaa-tagactaaatagtacttatagtatataaaatccgtcaacttagtc 41571478  T
Q  123 cctgctattaagatgttagggact 146  Q
    ||||||||||||||||| ||||||    
T  41571477 cctgctattaagatgtttgggact 41571454  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 42403349 - 42403392
Alignment:
Q  14 aataaatcatcaatttagtccctaaactatcattctctctccaa 57  Q
    |||||| || |||||||||||||||||||||| |||||||||||    
T  42403349 aataaaccaacaatttagtccctaaactatcactctctctccaa 42403392  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 48249630 - 48249660
Alignment:
Q  14 aataaatcatcaatttagtccctaaactatc 44  Q
    |||||||||||||||||||||||||||||||    
T  48249630 aataaatcatcaatttagtccctaaactatc 48249660  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 37080232 - 37080267
Alignment:
Q  14 aataaatcatcaatttagtccctaaactatcattct 49  Q
    ||||||||||||||||| ||||||||||||||||||    
T  37080232 aataaatcatcaatttaatccctaaactatcattct 37080267  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 58185 - 58108
Alignment:
Q  125 tgctattaagatgttagggactgaactgacaaatttttatatacttcaaggactaaattgatagatttt-tatagttta 202  Q
    |||||||||||||||| ||||| || ||||| ||| || |||||||||| ||||||||||||  ||||| |||||||||    
T  58185 tgctattaagatgttatggactaaattgacagattcttttatacttcaa-gactaaattgatgaattttatatagttta 58108  T

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