View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_high_45 (Length: 212)
Name: NF0669_high_45
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52831953 - 52832001
Alignment:
| Q |
1 |
aagcatggcatctttaactttctctcttcgttctaagctaataggatca |
49 |
Q |
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| T |
52831953 |
aagcatggcatctttaactttctctcttcgttctaagctaataggatca |
52832001 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 52832025 - 52832067
Alignment:
| Q |
73 |
atccgcaacagaaacacccttgttgattttttcatcaatttca |
115 |
Q |
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| T |
52832025 |
atccgcaacagaaacacccttgttgattttttcatcaatttca |
52832067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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