View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_high_9 (Length: 501)
Name: NF0669_high_9
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 146 - 358
Target Start/End: Original strand, 26380367 - 26380579
Alignment:
| Q |
146 |
ggtgaacggagcacggtggtggtgattgtctaacaatgacgatggtggttgtgacagaatacaacggcaatgacggtgatgaggtgaaagagagtggatg |
245 |
Q |
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|||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
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| T |
26380367 |
ggtgaacggagcacggtggtggtgattgtctaacgacgatgatggtggttgtgacagaatacgacggcgatgacagtgatgaggtgaaagagagtggatg |
26380466 |
T |
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| Q |
246 |
cgatggtgttggtgagtgaaagagaaaggagctgcagtgagaggttgggattgttgtggtgagaagagagaggagggagaagttaagtgagggttgtggg |
345 |
Q |
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| T |
26380467 |
cgatggtgttggtgagtgaaagagaagggagctgtagtgagaggttgggattgttgtggtgagaagagagacgagggagaagataagtgagggttgtggg |
26380566 |
T |
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| Q |
346 |
aaagagtgttgct |
358 |
Q |
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| T |
26380567 |
aaagagtgttgct |
26380579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 26380216 - 26380320
Alignment:
| Q |
43 |
tgaaaggagtggaggagggaggagacgaagtgttcgttggatctgagacgacgtggtggtggcgagatgagacaacgtggtggtgacaaagtgttggaac |
142 |
Q |
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| T |
26380216 |
tgaaaggagtggaggagggaggagacgaagtgttcgttggatttgagacgacgtggtggtggtgagatgagacaacgtggaggtgacgaagtgttggaac |
26380315 |
T |
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| Q |
143 |
ggagg |
147 |
Q |
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||||| |
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| T |
26380316 |
ggagg |
26380320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 8e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 230 - 361
Target Start/End: Complemental strand, 6132816 - 6132680
Alignment:
| Q |
230 |
tgaaagagagtggatgcgatggtgttg-----gtgagtgaaagagaaaggagctgcagtgagaggttgggattgttgtggtgagaagagagaggagggag |
324 |
Q |
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| T |
6132816 |
tgaaagagagtggatgcgatggtgttgtgttggtgagtgtaagagaaaggagctgcagtgagaagttgggattgttgtggtgagaagagagacgagggag |
6132717 |
T |
|
| Q |
325 |
aagttaagtgagggttgtgggaaagagtgttgctgtt |
361 |
Q |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
6132716 |
aagataagtgagggttgtgggaaagagtgttgctgtt |
6132680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 6133026 - 6132916
Alignment:
| Q |
37 |
gtgagctgaaaggagtggaggagggaggagacgaagtgttcgttggatctgagacgacgtggtggtggcgagatgagacaacgtggtggtgacaaagtgt |
136 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6133026 |
gtgagatgaaaggagtggaggagggaggagacgaagtgttagttggatctgagactgcgtggtggtggcgagatgagacaacgtggtggtgacgaagtgt |
6132927 |
T |
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| Q |
137 |
tggaacggagg |
147 |
Q |
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| T |
6132926 |
tggaacggagg |
6132916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 461
Target Start/End: Complemental strand, 6132664 - 6132624
Alignment:
| Q |
421 |
catgaaatgtattaatttttctgtgtttagttatgatgatg |
461 |
Q |
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| T |
6132664 |
catgaaatgtattaatttttctgggtttagttatgatgatg |
6132624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 22336879 - 22336994
Alignment:
| Q |
158 |
acggtggtggtgattgtctaacaatgacgatggtggttgtgacagaatacaacggcaatgacggtgatgaggtgaaagagagtggatgcgatggtgttgg |
257 |
Q |
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|||| ||||||||||||||||| | || |||||||||||||| ||||||| |||| ||||| ||||||| ||||||||||||||||||||||| ||| |
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| T |
22336879 |
acggcggtggtgattgtctaacgacgatgatggtggttgtgatagaatactgcggcgatgacagtgatgaagtgaaagagagtggatgcgatgg---tgg |
22336975 |
T |
|
| Q |
258 |
tgagtgaaagagaaaggag |
276 |
Q |
| |
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||||||||||||||||||| |
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| T |
22336976 |
tgagtgaaagagaaaggag |
22336994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 22336760 - 22336842
Alignment:
| Q |
62 |
aggagacgaagtgttcgttggatctgagacgacgtggtggtggcgagatgagacaacgtggtggtgacaaagtgttggaacggagg |
147 |
Q |
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| T |
22336760 |
aggagacgaagtgttcgtcagatctaagacaacatggt---ggcgagatgagacgacgtggtggtgacgaagtgttagaacggagg |
22336842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 281
Target Start/End: Original strand, 23396883 - 23397008
Alignment:
| Q |
154 |
gagcacggtggtggtgattgtctaacaatgacgatggtggttgtgacagaatacaacggcaatgacggtgatgaggtgaaagagagtggatgcgatggtg |
253 |
Q |
| |
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||||| ||||||||||||| |||||| | || |||||||||||||| ||||||| || | ||||||||||||| |||||||||||||| || ||||| |
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| T |
23396883 |
gagcatggtggtggtgattatctaacgacgatgatggtggttgtgatagaatacggcgacgatgacggtgatgaagtgaaagagagtggctgagatgg-- |
23396980 |
T |
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| Q |
254 |
ttggtgagtg-aaagagaaaggagctgca |
281 |
Q |
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||||||||| ||||||||||||| |||| |
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| T |
23396981 |
-tggtgagtgaaaagagaaaggagttgca |
23397008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 23396780 - 23396831
Alignment:
| Q |
96 |
tggtggtggcgagatgagacaacgtggtggtgacaaagtgttggaacggagg |
147 |
Q |
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|||||| ||||||||||||| ||||||| ||||| ||||||| ||||||||| |
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| T |
23396780 |
tggtggcggcgagatgagacgacgtggtagtgacgaagtgttagaacggagg |
23396831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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