View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_1 (Length: 894)

Name: NF0669_low_1
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_1
NF0669_low_1
[»] chr4 (2 HSPs)
chr4 (66-894)||(37834516-37835343)
chr4 (19-70)||(37834427-37834478)


Alignment Details
Target: chr4 (Bit Score: 744; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 66 - 894
Target Start/End: Original strand, 37834516 - 37835343
Alignment:
Q  66 caacagataaaattggacaaccaaaaaatatatgattttttgtttcaactctgccacaatccaccaacacatagagaagaagagttcaggttcacccctc 165  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37834516 caacagataaaattggacgaccaaaaaatatatgattttttgtttcaactctgccacaatccaccaacacatagagaagaagagttcaggttcacccctc 37834615  T
Q  166 ttttactaagattttcctgagtaggaaactaggaatcctaacaaatggtaagctaccttaactgagaaactcgactctcctcacttccaaacatcttcct 265  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37834616 ttttactaagattttcctcagtaggaaactaggaatcctaacaaatggtaagctaccttaactgagaaactcgactctcctcacttccaaacatcttcct 37834715  T
Q  266 gtcccaccctccaacttctcaactccaagaaccaaaccatttcctcctcccgttgaaacaaccttcttctccaactccttcaacaatcatatctgctagg 365  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37834716 gtcccaccctccaacttctcaactccaagaaccaaaccgtttcctcctcccgttgaaacaaccttcttctccaactccttcaacaatcatatctgctagg 37834815  T
Q  366 catttatctttatcaagcgatatatcataaactctactaaagagatgacgcaagttgtctccatcgctccatccaaaaattcgtgcctttcccatctcca 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37834816 catttatctttatcaagcgatatatcataaactctactaaagagatgacgcaagttgtctccatcgctccatccaaaaattcgtgcctttcccatctcca 37834915  T
Q  466 atcaccttccttaagttttcatcaaaccaactcacccctacacgcttcggatacgctgctcatataaatatattcatacagaaattcaatttggattgca 565  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  37834916 atcaccttccttaagttttcatcaaaccaactcacccctccacgcttcggatacgctactcatataaatatattcatacagaaattcaatttggattgga 37835015  T
Q  566 tcatgctcacccatagtagttagttatattttcaattgaacaacaatataaatatattattaattaatacagaatacagatggctactcatatttttaaa 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37835016 tcatgctcacccatagtagttagttatattttcaattgaacaacaatataaatatattattaattaatacataatacagatggctactcatatttttaaa 37835115  T
Q  666 aggttggaacaaatcacaaattcaagtcaatgnnnnnnnnnnnnnnnncttacatcaataagactgatgatgcctgataatgcatcacagtggataaact 765  Q
    ||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37835116 aggttggaacaaatcacaaattcaagtcaatg-gaaaaaaaaaaaaaacttacatcaataagactgatgatgcctgataatgcatcacagtggataaact 37835214  T
Q  766 caattttgtgctcaacttctgccttctgaatgaagggcaatcctgtctcgtacgcttctttatccttatcaattcctattacctgaaattagagaaattt 865  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37835215 caattttgtgctcaacttctgccttctgaatgaagggcaatcctgtctcgtacgcttctttatccttatcaattcctattacctgaaattagagaaattt 37835314  T
Q  866 attaacaactacactttattctaatttat 894  Q
    ||||| |||||||||||||||||||||||    
T  37835315 attaataactacactttattctaatttat 37835343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 37834427 - 37834478
Alignment:
Q  19 cagaaccagaaccagacccctgtgcacaatcagacgggactagactccaaca 70  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  37834427 cagagccagaaccagacccctgtgcacaatcagacaggactagactccaaca 37834478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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