View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_1 (Length: 894)
Name: NF0669_low_1
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 744; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 66 - 894
Target Start/End: Original strand, 37834516 - 37835343
Alignment:
| Q |
66 |
caacagataaaattggacaaccaaaaaatatatgattttttgtttcaactctgccacaatccaccaacacatagagaagaagagttcaggttcacccctc |
165 |
Q |
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| T |
37834516 |
caacagataaaattggacgaccaaaaaatatatgattttttgtttcaactctgccacaatccaccaacacatagagaagaagagttcaggttcacccctc |
37834615 |
T |
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| Q |
166 |
ttttactaagattttcctgagtaggaaactaggaatcctaacaaatggtaagctaccttaactgagaaactcgactctcctcacttccaaacatcttcct |
265 |
Q |
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| T |
37834616 |
ttttactaagattttcctcagtaggaaactaggaatcctaacaaatggtaagctaccttaactgagaaactcgactctcctcacttccaaacatcttcct |
37834715 |
T |
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| Q |
266 |
gtcccaccctccaacttctcaactccaagaaccaaaccatttcctcctcccgttgaaacaaccttcttctccaactccttcaacaatcatatctgctagg |
365 |
Q |
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| T |
37834716 |
gtcccaccctccaacttctcaactccaagaaccaaaccgtttcctcctcccgttgaaacaaccttcttctccaactccttcaacaatcatatctgctagg |
37834815 |
T |
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| Q |
366 |
catttatctttatcaagcgatatatcataaactctactaaagagatgacgcaagttgtctccatcgctccatccaaaaattcgtgcctttcccatctcca |
465 |
Q |
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| T |
37834816 |
catttatctttatcaagcgatatatcataaactctactaaagagatgacgcaagttgtctccatcgctccatccaaaaattcgtgcctttcccatctcca |
37834915 |
T |
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| Q |
466 |
atcaccttccttaagttttcatcaaaccaactcacccctacacgcttcggatacgctgctcatataaatatattcatacagaaattcaatttggattgca |
565 |
Q |
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| T |
37834916 |
atcaccttccttaagttttcatcaaaccaactcacccctccacgcttcggatacgctactcatataaatatattcatacagaaattcaatttggattgga |
37835015 |
T |
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| Q |
566 |
tcatgctcacccatagtagttagttatattttcaattgaacaacaatataaatatattattaattaatacagaatacagatggctactcatatttttaaa |
665 |
Q |
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| T |
37835016 |
tcatgctcacccatagtagttagttatattttcaattgaacaacaatataaatatattattaattaatacataatacagatggctactcatatttttaaa |
37835115 |
T |
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| Q |
666 |
aggttggaacaaatcacaaattcaagtcaatgnnnnnnnnnnnnnnnncttacatcaataagactgatgatgcctgataatgcatcacagtggataaact |
765 |
Q |
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| T |
37835116 |
aggttggaacaaatcacaaattcaagtcaatg-gaaaaaaaaaaaaaacttacatcaataagactgatgatgcctgataatgcatcacagtggataaact |
37835214 |
T |
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| Q |
766 |
caattttgtgctcaacttctgccttctgaatgaagggcaatcctgtctcgtacgcttctttatccttatcaattcctattacctgaaattagagaaattt |
865 |
Q |
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| T |
37835215 |
caattttgtgctcaacttctgccttctgaatgaagggcaatcctgtctcgtacgcttctttatccttatcaattcctattacctgaaattagagaaattt |
37835314 |
T |
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| Q |
866 |
attaacaactacactttattctaatttat |
894 |
Q |
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| T |
37835315 |
attaataactacactttattctaatttat |
37835343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 37834427 - 37834478
Alignment:
| Q |
19 |
cagaaccagaaccagacccctgtgcacaatcagacgggactagactccaaca |
70 |
Q |
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| T |
37834427 |
cagagccagaaccagacccctgtgcacaatcagacaggactagactccaaca |
37834478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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