View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_104 (Length: 241)
Name: NF0669_low_104
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_104 |
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| [»] scaffold0557 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: scaffold0557 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 9531 - 9766
Alignment:
| Q |
6 |
aataggcacaaatcaaatacattgaatttgaaaaagaaaatctaactcatagagagatattaaatcaaagattaatttaattttgatattggcatacacc |
105 |
Q |
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| T |
9531 |
aatagacacaaatcaaatacattgaatttgaaaaagaaaatctaactcacagagagatattaaatcaaagattaatttaattttgatattggcatacacc |
9630 |
T |
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| Q |
106 |
acgataggcagtcacttactttttctattgattaagttatcatgtacactgagttacatatatggataggatgtattaccaatttaattcaccaaatgat |
205 |
Q |
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||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9631 |
acgataggcagtcgcttacgttttctattgattaagttattatgtacactgagttacatatatggataggatgtattaccaatttatatcaccaaatgat |
9730 |
T |
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| Q |
206 |
ataatttggcttcaccaaaccagcccccaaaaaata |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
9731 |
ataatttggcttcaccaaaccagcccccaaaaaata |
9766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 29465698 - 29465463
Alignment:
| Q |
6 |
aataggcacaaatcaaatacattgaatttgaaaaagaaaatctaactcatagagagatattaaatcaaagattaatttaattttgatattggcatacacc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29465698 |
aataggcacaaatcaaatacattgaatttgaaaaagaaaatctaactcacagagggatattaaattaaagattaatttaattttgatattggcatacacc |
29465599 |
T |
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| Q |
106 |
acgataggcagtcacttactttttctattgattaagttatcatgtacactgagttacatatatggataggatgtattaccaatttaattcaccaaatgat |
205 |
Q |
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|||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29465598 |
acgataggtagtcccttactttttctattgattaagttattatgtacactgaattacatatatggttaggatgtattaccaatttaattcaccaaatgat |
29465499 |
T |
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| Q |
206 |
ataatttggcttcaccaaaccagcccccaaaaaata |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29465498 |
ataatttggcttcaccaaaccagcccccaaaaaata |
29465463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 2815 - 2596
Alignment:
| Q |
6 |
aataggcacaaatcaaatacattgaatttgaaaaagaaaatctaactcatagagagatattaaatcaaagattaatttaattttgatattggcatacacc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||| |
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| T |
2815 |
aataggcacaaatcaaatacattgaatttgaaaaagaaaatctaactcacagagagatattaaattaaagatta--------------ttgacatacacc |
2730 |
T |
|
| Q |
106 |
acgataggcagtcacttactttttctattgattaagttatcatgtacactgagttacatatatggataggatgtattaccaatttaattcaccaaatgat |
205 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2729 |
acgataggcagtcgcttactttttctattgattaagttattatgtacactgagttacatat--ggataggatgtattaccaatttaattcaccaaatgat |
2632 |
T |
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| Q |
206 |
ataatttggcttcaccaaaccagcccccaaaaaata |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2631 |
ataatttggcttcaccaaaccagcccccaaaaaata |
2596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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