View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_106 (Length: 229)

Name: NF0669_low_106
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_106
NF0669_low_106
[»] chr5 (3 HSPs)
chr5 (55-229)||(24186714-24186888)
chr5 (133-221)||(28710346-28710434)
chr5 (181-229)||(936864-936911)
[»] chr7 (3 HSPs)
chr7 (129-216)||(11916800-11916886)
chr7 (131-224)||(10058501-10058594)
chr7 (129-179)||(23221735-23221785)
[»] chr8 (2 HSPs)
chr8 (130-223)||(31214200-31214296)
chr8 (129-172)||(24104308-24104351)
[»] chr6 (1 HSPs)
chr6 (146-224)||(26278992-26279070)
[»] chr3 (2 HSPs)
chr3 (150-229)||(11201307-11201386)
chr3 (137-179)||(20431735-20431777)
[»] chr2 (1 HSPs)
chr2 (110-166)||(41368415-41368471)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 24186888 - 24186714
Alignment:
Q  55 taaggttacaaagaaacaaaaagaagttgagagagcaaaagaaaacaggggtttcagaggaaaggaagcaaagaaggcatagagagaaagctagggagag 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  24186888 taaggttacaaagaaacaaaaagaagttgagagagcaaaagaaaataggggttttagaggaaaggaggcaaagaaggcatagagagaaagctagggagag 24186789  T
Q  155 attcaatcgtagaattcaccgttgccgcaaaacattgaggtaatggcggagttttattcaatctaagggtagtat 229  Q
    ||| || ||||||||||||||||||||  |||||||||||||| || |||||||||||||||| | |||||||||    
T  24186788 atttaaccgtagaattcaccgttgccgttaaacattgaggtaagggtggagttttattcaatccatgggtagtat 24186714  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 28710346 - 28710434
Alignment:
Q  133 atagagagaaagct-agggagagattcaatcgtagaattcaccgttgccgcaaaacattgaggtaatggcggagttttattcaatctaag 221  Q
    ||||||||| |||| |||||||||||||| ||||||||| || ||||| || |||||| |||| || || ||||||||||||||||||||    
T  28710346 atagagagagagcttagggagagattcaaacgtagaatttactgttgctgctaaacatcgagg-aaagggggagttttattcaatctaag 28710434  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 936911 - 936864
Alignment:
Q  181 gcaaaacattgaggtaatggcggagttttattcaatctaagggtagtat 229  Q
    ||||||| ||||||||  || ||||||||||||||||||||||||||||    
T  936911 gcaaaactttgaggtacggg-ggagttttattcaatctaagggtagtat 936864  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 11916800 - 11916886
Alignment:
Q  129 aggcatagagagaaagctagggagagattcaatcgtagaattcaccgttgccgcaaaacattgaggtaatggcggagttttattcaat 216  Q
    ||||||| ||||||| |||||||||||||||| | ||||||  |||||||| || |||||||||||||| || ||||||| |||||||    
T  11916800 aggcataaagagaaaactagggagagattcaaccatagaatctaccgttgctgctaaacattgaggtaa-gggggagtttcattcaat 11916886  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 10058594 - 10058501
Alignment:
Q  131 gcatagagagaaagct-agggagagattcaatcgtagaattcaccgttgccgcaaaacattgaggtaatggcggagttttattcaatctaagggt 224  Q
    ||||| |||||||||| ||| ||||||||||| |||| |||||||| | | |||||||||  || ||| ||||||||||||||||||| ||||||    
T  10058594 gcataaagagaaagcttaggtagagattcaatagtaggattcaccgattctgcaaaacatcaagataa-ggcggagttttattcaatcaaagggt 10058501  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 23221735 - 23221785
Alignment:
Q  129 aggcatagagagaaagctagggagagattcaatcgtagaattcaccgttgc 179  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||| ||||||    
T  23221735 aggcatatagagaaagttagggagagattcaaccgtagaattcatcgttgc 23221785  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 31214200 - 31214296
Alignment:
Q  130 ggcatagagagaaagctagggagagattcaatcgtagaattcaccgttgccgcaaaacattgaggtaat---ggcggagttttattcaatctaaggg 223  Q
    ||||| ||||||||||||   |||||||||| |||||| ||||||| ||| || ||||||||| |||||   || ||||||||||||||||||||||    
T  31214200 ggcattgagagaaagctacatagagattcaaccgtagagttcaccgatgctgctaaacattgacgtaataagggaggagttttattcaatctaaggg 31214296  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 24104308 - 24104351
Alignment:
Q  129 aggcatagagagaaagctagggagagattcaatcgtagaattca 172  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  24104308 aggcataaagagaaagctagggagagattcaaccgtagaattca 24104351  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 26279070 - 26278992
Alignment:
Q  146 tagggagagattcaatcgtagaattcaccgttgccgcaaaacattgaggtaatggcggagttttattcaatctaagggt 224  Q
    |||||||||||||| | |||| ||||||   | | ||||||||| ||||||| || |||||||||||||||||||||||    
T  26279070 tagggagagattcagtagtaggattcactaattctgcaaaacatcgaggtaaggggggagttttattcaatctaagggt 26278992  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 11201307 - 11201386
Alignment:
Q  150 gagagattcaatcgtagaattcaccgttgccgcaaaacattgaggtaatggcggagttttattcaatctaagggtagtat 229  Q
    |||||||| || ||||||||| ||| |||| || ||||| |||||||| ||  || ||||||||| ||||||||||||||    
T  11201307 gagagattgaaccgtagaattgaccattgctgctaaacaatgaggtaaggggagatttttattcagtctaagggtagtat 11201386  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 20431735 - 20431777
Alignment:
Q  137 agagaaagctagggagagattcaatcgtagaattcaccgttgc 179  Q
    ||||||||||||||||| |||||| | ||||||||||||||||    
T  20431735 agagaaagctagggagatattcaaccatagaattcaccgttgc 20431777  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 41368415 - 41368471
Alignment:
Q  110 agaggaaaggaagcaaagaaggcatagagagaaagctagggagagattcaatcgtag 166  Q
    ||||||||||| | |||  |||||||||||||  |||||||||| ||||||||||||    
T  41368415 agaggaaaggaggaaaaagaggcatagagagacggctagggagatattcaatcgtag 41368471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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