View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_13 (Length: 490)
Name: NF0669_low_13
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 66 - 470
Target Start/End: Original strand, 20236357 - 20236761
Alignment:
| Q |
66 |
gatatgataacatgataggaaattaatcgaaccttggtgttccgactgagttgagaatggtgatgatggaaggaatgtaaacagctccccaaattggaac |
165 |
Q |
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| T |
20236357 |
gatatgataacatgatagaaaagtaatcggaccttggtgttccgactgagttgagaatggtgatgatggaaggaatgtaaacagctccccaaattggaac |
20236456 |
T |
|
| Q |
166 |
ataaacctcaggaaccaaaattgtgaggggaattacaagacagtagaagaagaaagtgaccatgtgagctacgatcttgcgaacaaggaaaaagctgtat |
265 |
Q |
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| T |
20236457 |
atgaacctcaggaaccaaaattgtgaggggaattacaagacagtagaagaagaaagtgaccatgtgagctacgatcttgcgaacaaggaaaaagctgtat |
20236556 |
T |
|
| Q |
266 |
ataacatacacttttttccagaacttcactttctgcacacaaaaaccaaaacagaacatcattaaaattcggaacataaatgaaaatagaattaagtttt |
365 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20236557 |
ataacatacactttcttccagaacttcactttctgcacacaaaaaccaaaacagaacatcattaaaattcggaacataaatgaaaatagaattaagttct |
20236656 |
T |
|
| Q |
366 |
ttgtctctttattcttaatcttaacaaacaaacataccttgttccttataatctccatcgccattttgcggaacagattagcaggaccacacgaccatct |
465 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20236657 |
ttgtctcttcattcttaatcttaacaaacaaacataccttgttccttataatctccatcgccattttgcggaacagattagcaggaccacacgaccatct |
20236756 |
T |
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| Q |
466 |
gtgct |
470 |
Q |
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||||| |
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| T |
20236757 |
gtgct |
20236761 |
T |
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