View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_15 (Length: 467)
Name: NF0669_low_15
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 33594069 - 33594399
Alignment:
| Q |
11 |
cagagacgacaaacttgttatcccttttctatggtgttttccacatacaaaattatagtgtatatatgatatgacatgatatta--tttttgttactgtt |
108 |
Q |
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| T |
33594069 |
cagagacgacaaacttgttatcccttttctatggtgttttccacatacaaaattatagtgtatatatgatatgacatgatatttattttttgttactgtt |
33594168 |
T |
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| Q |
109 |
atctannnnnnnagcaagttactgttatcttatttgtatgtacatgtggaggaaaataatttgcttcatttaagatttgtatatgatctaagacatgtac |
208 |
Q |
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| T |
33594169 |
atctatttttttagcaagttactgttatcttatttgtatgtacatgtggaggaaaataatttgcttcatttaagatttgtat--gatctgagacttgtac |
33594266 |
T |
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| Q |
209 |
tatttttatttgattgatgatgatagaaggggtgtagatttaaggcatgggaatgtgaatgattggatatgaaattaatggaaattttgaaacagctctg |
308 |
Q |
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| T |
33594267 |
tatttttatttgattgatgat---agtaggggtgtcgatttaaggcatgggaatgtgaatgattggatatgaaattaatggaaattgtgaaacagctctg |
33594363 |
T |
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| Q |
309 |
gtgacttgatgggtcttaatttcttcatcctcatgt |
344 |
Q |
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| T |
33594364 |
gtgacttgatgggtcttaatttcttcatcatcatgt |
33594399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 342 - 449
Target Start/End: Original strand, 33596525 - 33596632
Alignment:
| Q |
342 |
tgtggactaccttatgccaacaccaatttatctgtaattccatcggttgtgggatattattgaatctttgctatattactctacatgtggatgaaagtga |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33596525 |
tgtggactaccttatgccaacaccaatttatctgtaattccatcggttgtgggatattattgaatttttgctatattactctacatgtggatgaaagtga |
33596624 |
T |
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| Q |
442 |
tgatgtcc |
449 |
Q |
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|||||||| |
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| T |
33596625 |
tgatgtcc |
33596632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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