View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_16 (Length: 462)
Name: NF0669_low_16
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 2557157 - 2556793
Alignment:
| Q |
1 |
ttaacctgtgtaggccaagtatatattctaaacgtttttgtttatgttgtctttcaattaaaattaggaaatgcagatattcaaataaaaatttggatag |
100 |
Q |
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| T |
2557157 |
ttaacctgtgtaggccaagtatatattctaaacgtttttgtttatgttgtctttcaattaaaattaggaaatgcagatattcaaatcaaaatttggatag |
2557058 |
T |
|
| Q |
101 |
ggaatgtcacaagggaagcaaaaaatgaagtttctgcatgaattgcattgcaacttgattaatggatacactgtttatttaacaatttatttctccgcat |
200 |
Q |
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| T |
2557057 |
ggaatgtcacaaggcaagcaaaaaatgaagtttctgcatgaattgcattgcaacttgattaatggatacactgtttatttaacaatttatttctccgcat |
2556958 |
T |
|
| Q |
201 |
aatggaggccaataaaataaaacattaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacnnnnnnntgaagtc |
300 |
Q |
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| T |
2556957 |
aatggaggccaataaaataaaacattaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaaaatgaagtc |
2556858 |
T |
|
| Q |
301 |
atttttcctgcttgagtagctacaatgttattttgatccaatagaatgtcgaaacaaccagagga |
365 |
Q |
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| T |
2556857 |
atttttcctgcttgagtagctacaatgttattttgatccaatagaatgtcgaaacaaccagagga |
2556793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 55 - 361
Target Start/End: Complemental strand, 2566929 - 2566623
Alignment:
| Q |
55 |
caattaaaattaggaaatgcagatattcaaataaaaatttggatagggaatgtcacaagggaagcaaaaaatgaagtttctgcatgaattgcattgcaac |
154 |
Q |
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| T |
2566929 |
caattaaaattatgaaatgcagatattcaaatccaaatttctatagggaatgtcataaggcaagcaaaaaatgaagtttctgcaagaattgcattgcaac |
2566830 |
T |
|
| Q |
155 |
ttgattaatggatacactgtttatttaacaatttatttctccgcataatggaggccaataaaataaaac---attaattagatagacaagagacatttgg |
251 |
Q |
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| T |
2566829 |
ttgattaat-gatacactctttatttagc--tttatttctccacataatggaggccaataaaataaaacattattaactagataggcaagagacatttgg |
2566733 |
T |
|
| Q |
252 |
aaaagtatttctaactgttccatgagcatttctacnnnnnnntgaagtcatttttcctgcttgagtagctacaatgttattttgatccaatagaatgtcg |
351 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
2566732 |
aaaagtatttctaactgttccatgagcatttctacaaaaaaatgaagtcttttttcctgcttgagtagctacaatgttattttgatccaatagaatattg |
2566633 |
T |
|
| Q |
352 |
aaacaaccag |
361 |
Q |
| |
|
|||||||||| |
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| T |
2566632 |
aaacaaccag |
2566623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 221 - 362
Target Start/End: Complemental strand, 2551327 - 2551186
Alignment:
| Q |
221 |
aacattaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacnnnnnnntgaagtcatttttcctgcttgagtagc |
320 |
Q |
| |
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|||||||||||||||| |||| |||| |||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||| ||||| || |
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| T |
2551327 |
aacattaattagataggcaagggacaattggaatagtatttctaactattccatgagcatttctacaaaaagaggaagtcttctttcctggttgagcaga |
2551228 |
T |
|
| Q |
321 |
tacaatgttattttgatccaatagaatgtcgaaacaaccaga |
362 |
Q |
| |
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| T |
2551227 |
tacaatgttattttgatctaatagaatcttaaaacaaccaga |
2551186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 2546884 - 2546828
Alignment:
| Q |
304 |
tttcctgcttgagtagctacaatgttattttgatccaatagaatgtcgaaacaacca |
360 |
Q |
| |
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||||||| ||||| || ||||||| |||||||||||||||||||| ||||||||| |
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| T |
2546884 |
tttcctgattgagaagagacaatgtcattttgatccaatagaatgttcaaacaacca |
2546828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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