View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_17 (Length: 458)
Name: NF0669_low_17
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 446
Target Start/End: Original strand, 5139944 - 5140365
Alignment:
| Q |
30 |
gaatggtggtggttgcgtcggtgaaagtgaaggtggagttgttgaaaaggtggttgggtgaaacggcgtcgttggagatggtggttaaattggggatgtt |
129 |
Q |
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| T |
5139944 |
gaatggtggtggttgcgtcggtgaaagtgaaggtggagttgttgaaaaggtggttgggtgaaacggcgtcgtcggagatggtggttaaattagggatgtt |
5140043 |
T |
|
| Q |
130 |
acgccacgtggcgacagttttgttcgttgtgtctgtcatagggataagtttgatggttttggtatactgcgtgtgttttggttatgctcacatcaagatt |
229 |
Q |
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| T |
5140044 |
acgccacgtggcgacagttttgttcgttgtgtctgtcatagggataagtttgatggttttggtatactgcgtgtgttttggttatgctcacatcaagatt |
5140143 |
T |
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| Q |
230 |
gaatttttaccaactatatttcaacaa---tannnnnnnnnnnngagcaattcaacaacttttatttttcatacacattctta-ttaannnnnnnnnnat |
325 |
Q |
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||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
5140144 |
gaatttttaccaactatatttcaactaattttttttttttttttgagcaattcaacaacttttatttttcatacacattcttatttaattttttttttat |
5140243 |
T |
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| Q |
326 |
cag-aaaagnnnnnnnnntagtgatatttgaacaacatctaagacaattttggtatttaattacattttccactataacatgattaaaatgttccttcta |
424 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
5140244 |
cagaaaaagaaaaaaaaatagtgatatttgaacaacatctaagacaattttggtacttaattatattttccactataatatgattaaaatgttccttcta |
5140343 |
T |
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| Q |
425 |
aaccatgtcaaagctcaagtat |
446 |
Q |
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| T |
5140344 |
aaccatgtcaaagctcaagtat |
5140365 |
T |
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