View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_18 (Length: 452)
Name: NF0669_low_18
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 27 - 440
Target Start/End: Original strand, 22264624 - 22265029
Alignment:
| Q |
27 |
tcaagttctacaaaggagacaaatactaacacactaacatttattatta---cttgtcnnnnnnnncatttattattaacaagaagaaaggtcttcttta |
123 |
Q |
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| T |
22264624 |
tcaagttctacaaaggagacaaatactaacacactaacatttattattaacacttgtcaaaaaaa-catttattattaacaagaagaaaggtcttgttta |
22264722 |
T |
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| Q |
124 |
tctataacaacaattaaaacctaaattgaatatagcttttgaaaaccaacaaagtttnnnnnnnntcgcaatttaagagtttttaattagtgaatattgt |
223 |
Q |
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| T |
22264723 |
tctatgacaacaattaaaacctaaattgaatatagctcttgaaaaccaacaaagttttaaaaaaatcgcaatttaagagtttttaattagtgaatattgt |
22264822 |
T |
|
| Q |
224 |
taccatgaagtagaaaactgaggctatgttgttgaaaagtgaagctgaggattatgtgaaaagagagagtagaatgaactgaggttaccaaaacctagga |
323 |
Q |
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| T |
22264823 |
taccatgaagtagaaaactgaggctatgttgttgaaaagtgaagctgaggattatgtgaaaagagagagtagaatgaaccgaggttaccaaaacctagga |
22264922 |
T |
|
| Q |
324 |
atgtgaagaagaatatttgaacggaagtgtttatacacaaattaagataaagataaatgtgcagttaaagtaatatttgatttgattcgcattagtttag |
423 |
Q |
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| T |
22264923 |
atgtgaagaagaatatttgaacggaagtatttatacacaaattaag-----ga-----gtccagttaaagtaatatttgatttgattcgcattagtttag |
22265012 |
T |
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| Q |
424 |
gttaaatattcaatatt |
440 |
Q |
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| T |
22265013 |
gataaatattcaatatt |
22265029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 191 - 335
Target Start/End: Complemental strand, 22269272 - 22269130
Alignment:
| Q |
191 |
gcaatttaagagtttttaattagtgaatattgttaccatgaagtagaaaactgaggctatgttgttgaaaagtgaagctgaggattatgtgaaaagagag |
290 |
Q |
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| T |
22269272 |
gcaatttaagagtttttgaatagagaatg--gttaccatgaagtagaaaactgaggctatatcgttcaatagtgaagcttcggattatgtgaaaagagag |
22269175 |
T |
|
| Q |
291 |
agtagaatgaactgaggttaccaaaacctaggaatgtgaagaaga |
335 |
Q |
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| T |
22269174 |
agtggaatgaactgaggttaccaaatactaggaatgtgaaaaaga |
22269130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 22269357 - 22269311
Alignment:
| Q |
29 |
aagttctacaaaggagacaaatactaacacactaacatttattatta |
75 |
Q |
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| T |
22269357 |
aagttctgcaaagaagacaaatactaacacactaacatttattatta |
22269311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 22269068 - 22269033
Alignment:
| Q |
382 |
gtgcagttaaagtaatatttgatttgattcgcatta |
417 |
Q |
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| T |
22269068 |
gtgcagttaaagtaatatttgatttgattcacatta |
22269033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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