View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_2 (Length: 760)
Name: NF0669_low_2
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 87 - 731
Target Start/End: Complemental strand, 11869598 - 11868936
Alignment:
| Q |
87 |
acatcatcattcacataaatggaaatatcaaaatgaacacaaaataacatgtacaaaaaagataaaccgaatctatatacaacaaacgtagaagaacaca |
186 |
Q |
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| T |
11869598 |
acatcatcattcacataaatggaaatatcaaaatgaacacaaaataacatgtacaaaaaagataaaccgaatctatatacaataaacgtagaagaacaca |
11869499 |
T |
|
| Q |
187 |
aatcttaatcagtatggttttaaattattgatctggaatatagttattgcttgccgcaactaacgatgaacagtcggtgtaatgtacctgactggccctg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
11869498 |
aatcttaatcagtatggttttaaattattgatctggaatatagtaattgcttgccgcaactaaggatgaacagttggtgtaatgtacctgactggccctg |
11869399 |
T |
|
| Q |
287 |
tcatattcagcttcacttctagaagcatcctcaatttggaagggtaaaacgggatcagccctactcacaaaatacaatttacttgactttccacctataa |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11869398 |
tcatattcagcttcacttctagaagcatcctcaatttggaagggtaaaacgggatcagccctactcacaaaatacaatttacttgactttccacctataa |
11869299 |
T |
|
| Q |
387 |
cgaacaaaaccacacaacacaatatcgtcataaccctaaacaatacagctcacactcc-aaatcaaattttcacaacaccacaaaattagaaaccctaaa |
485 |
Q |
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| T |
11869298 |
cgaacaaaaccacacaacacaatatcgtcataaccctaaacaatacaactcacactccaaaatcaaattttcacaacaccacaaaattagaaaccctaaa |
11869199 |
T |
|
| Q |
486 |
aaactaataaaaacc----------------taataggagcagccggaatggaaacaacgccatgaacgtccaccacagactcgcggctgagagcttttg |
569 |
Q |
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| T |
11869198 |
aaactaataaaaacctgctgagtggtgcctttaataggagcagccggaatggaaacaacgccatgaacgtccaccacagactcgcggctgatagtttttg |
11869099 |
T |
|
| Q |
570 |
tgaacttcaccatctgctcactcactgaatcaggctgagtttgcaccaagcactgtacagtttcaacattttctctgaggactaaaaacgccatcttctt |
669 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
11869098 |
cgaacttcaccatctgctcactcactgaatcaggctgagtttgcaccaagcactgtacagtttcaacattttctttgaggactaaaaacgccaacttctt |
11868999 |
T |
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| Q |
670 |
actcactggtcgtat-gtttgtaccctcccttgaattctaactgaattattcaccggtgaatc |
731 |
Q |
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| T |
11868998 |
actcactggtcgtatagtttgtaccctccctcaaattctaactgaattattcaccagtgaatc |
11868936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 575 - 669
Target Start/End: Complemental strand, 3103655 - 3103561
Alignment:
| Q |
575 |
ttcaccatctgctcactcactgaatcaggctgagtttgcaccaagcactgtacagtttcaacattttctctgaggactaaaaacgccatcttctt |
669 |
Q |
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|||||||||||| ||| ||| ||||||| || | || |||||||||||||| || | |||||||||||| |||||| |||||||||||||| |
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| T |
3103655 |
ttcaccatctgcggacttactaaatcaggttgtgcctgaaccaagcactgtacggtgaaaccattttctctgatgactaagaacgccatcttctt |
3103561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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