View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_22 (Length: 433)
Name: NF0669_low_22
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 127 - 319
Target Start/End: Original strand, 35507987 - 35508179
Alignment:
| Q |
127 |
taattgggaaagaaaaccgaacccttaagaaatgggtatgagggaaatcaatggccaaatgagagaagagttggtccatgtgtttggaagcttcacccca |
226 |
Q |
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| T |
35507987 |
taattgggaaagaaaaccgaacccttaagaaatgggtatgagggaaatcaatggccaaatgagagaagagttggtccatgtgtttggaagcttcacacca |
35508086 |
T |
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| Q |
227 |
tgacccccagaagtgaagccccgccggagaaccgccgcgaacaacctcatccaactccgactttgacttcacgtctcgcaccgaaccccccat |
319 |
Q |
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| T |
35508087 |
tgacgcccagaagtgaagcaccgccggagaaccgccgcgaaccacctcatccaactccgactttgacttcacgtctcgcaccgaaccacccat |
35508179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 35507869 - 35507920
Alignment:
| Q |
9 |
agcagagacagaataagcctcagatatctctggttgttcttcagcttcaacc |
60 |
Q |
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| T |
35507869 |
agcagagacagaataagcctcagatatctctggttgttcttcagcttcaacc |
35507920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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