View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_24 (Length: 413)
Name: NF0669_low_24
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 46 - 379
Target Start/End: Complemental strand, 36571667 - 36571334
Alignment:
| Q |
46 |
atcatccactacaatccaacttttgattaagcaaaacagttaggagtatcatacttttcattcatcatgtgttggaaaaaggacctcctttgctaacatc |
145 |
Q |
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| T |
36571667 |
atcatccactacaatccaacttttgattaatcaaaacagttaggagtatcatacttttcattcatcatgtgttggaaaaaggacctcctttgctaacatc |
36571568 |
T |
|
| Q |
146 |
tatggaaaacgatgcattagtccatctgtatgtgcatatcctccaatgaatacacttccaaattgcggtaacatcggtattggactttatagtgacaaga |
245 |
Q |
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| T |
36571567 |
tatggaaaacgatgcattagtccatctgtatgtgcatatcctccaatggatacacttccaaattgcggtaacatcggtattggactttatagtgacaaga |
36571468 |
T |
|
| Q |
246 |
aatttcaaagtaacatcctttgattagactttgcctctttatcnnnnnnncctccgaaagtataaattttacacatatttccaaacttaagttagtgagg |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571467 |
aatttcaaagtaacatcctttgattagactttgcctctttatctttttttcctccaaaagtataaattttacacatatttccaaacttaagttagtgagg |
36571368 |
T |
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| Q |
346 |
tgcttgtttagtggtaatagtttaacctcctaat |
379 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
36571367 |
tgcttgtttaatggtaatagtttaacctcctaat |
36571334 |
T |
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