View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_29 (Length: 392)
Name: NF0669_low_29
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 65 - 363
Target Start/End: Original strand, 41895494 - 41895794
Alignment:
| Q |
65 |
tataatccaaaccatcgttacataggtatgatcataataccaacaatgaagaaaaaattacaaaacttcaca--cacatattgaaacaagtgtcttttgt |
162 |
Q |
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| T |
41895494 |
tataatccaaaccatcgttacataggtatgatcataataccaacaatgaagaaaaaattacaaaacttcacacacacatattgaaacaagtgtcttttgt |
41895593 |
T |
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| Q |
163 |
aaaataagtaaacatttctccaaaacatagttcgtcacacacatataaccactgcattttgttatgcaacattattgaaccatgttttactcaattgttg |
262 |
Q |
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| T |
41895594 |
aaaataagtaaacatttctccaaaacatagttcgtcacacacatataaccactgcattttgttatgcaacattattgaaccatgttttactcaattgttg |
41895693 |
T |
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| Q |
263 |
gtagttatacgtgaacgaacacgagaataaaaggcccaatcaggatgagatgttgtaattgctggttcaccaatagcattatctttcacatatgacggaa |
362 |
Q |
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| T |
41895694 |
gtagttatacgtgaacgaacacgagaataaaaggcccaatcaggatgagatgttgtaattgctggttcaccaatagcattatctttcacatatgactgaa |
41895793 |
T |
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| Q |
363 |
c |
363 |
Q |
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| T |
41895794 |
c |
41895794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 363
Target Start/End: Original strand, 41890734 - 41890895
Alignment:
| Q |
204 |
catataaccactgcattttgttatgcaacattattgaaccatgttttactcaattgttggtagttatacgtgaacgaacacgagaataaaa--ggcccaa |
301 |
Q |
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| T |
41890734 |
cataaaaccactacatttcgttatgcaacatcgttgaacgatgttccactcaattgttagaagttataagtgaacgaacacgagaataaaattgccccaa |
41890833 |
T |
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| Q |
302 |
tcaggatgagatgttgtaattgctggttcaccaatagcattatctttcacatatgacggaac |
363 |
Q |
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| T |
41890834 |
tgaggatgagaagttgtaattgctggtacaccaaaagcattatccctcacatatgactgaac |
41890895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 41900799 - 41900865
Alignment:
| Q |
297 |
cccaatcaggatgagatgttgtaattgctggttcaccaatagcattatctttcacatatgacggaac |
363 |
Q |
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| T |
41900799 |
cccaatcaggatgagatgttgtaattgctggtacaccaaaagcattatccttcacataagactgaac |
41900865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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