View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_30 (Length: 389)
Name: NF0669_low_30
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_30 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 46 - 281
Target Start/End: Complemental strand, 32635393 - 32635158
Alignment:
| Q |
46 |
aaggaaatattgtctgggatttcagacaagaaaggaacatttgtaccaaataatatcaagtgttttacattcacgaaagcaggagtaggaagtactttat |
145 |
Q |
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| T |
32635393 |
aaggaaatgttgtctgggatttcagacaagaaaggaacatcattaccaaataatattaagtgttttacactcaggaaagcaggactaggaagtattttat |
32635294 |
T |
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| Q |
146 |
gtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggcaaagttttcaggaagatccacaagactatcactgacggg |
245 |
Q |
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| T |
32635293 |
gtaagatgatggaagagtcacgttcacctttcagtgaattcgcaagccagatacaattggcaaagttttcaggaagatccacaagactatcactgatagg |
32635194 |
T |
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| Q |
246 |
agataaaaaatattcaagattttttgtatgcaatat |
281 |
Q |
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| T |
32635193 |
agataaaaaatattcaagattttttgtatgcaatat |
32635158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 5605362 - 5605493
Alignment:
| Q |
108 |
ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca |
207 |
Q |
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| T |
5605362 |
ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa |
5605461 |
T |
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| Q |
208 |
aagttttcaggaagatccacaagactatcact |
239 |
Q |
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| T |
5605462 |
aagtttacaggaagatcaacaagacaatcact |
5605493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 5630008 - 5629877
Alignment:
| Q |
108 |
ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca |
207 |
Q |
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| T |
5630008 |
ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa |
5629909 |
T |
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| Q |
208 |
aagttttcaggaagatccacaagactatcact |
239 |
Q |
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| T |
5629908 |
aagtttacaggaagatcaacaagacaatcact |
5629877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 13167114 - 13167080
Alignment:
| Q |
207 |
aaagttttcaggaagatccacaagactatcactga |
241 |
Q |
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| T |
13167114 |
aaagttttcaggaagatccacaagacaatcactga |
13167080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 14406641 - 14406567
Alignment:
| Q |
206 |
caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaata |
280 |
Q |
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| T |
14406641 |
caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaata |
14406567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 6308451 - 6308488
Alignment:
| Q |
204 |
ggcaaagttttcaggaagatccacaagactatcactga |
241 |
Q |
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| T |
6308451 |
ggcaaagttttctggaagatccacaagacaatcactga |
6308488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 5553370 - 5553338
Alignment:
| Q |
207 |
aaagttttcaggaagatccacaagactatcact |
239 |
Q |
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| T |
5553370 |
aaagttttcaggaagatccacaagacaatcact |
5553338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 275 - 385
Target Start/End: Original strand, 48730275 - 48730385
Alignment:
| Q |
275 |
gcaatatgcaaaggagtatcaacaaatggtattaaattatagcgttctaagatgtaaggatccatttgaatcagtttgtatagcaagtctatatctccca |
374 |
Q |
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| T |
48730275 |
gcaatatgcaaaggagtatcaacaaatggtattaaattatagcgttctaagatgtaaggatcgatttgaatcagtttgaatagcaagtctatatctccca |
48730374 |
T |
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| Q |
375 |
tctgtgctgct |
385 |
Q |
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| T |
48730375 |
tttgtgctgct |
48730385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 4818977 - 4818941
Alignment:
| Q |
275 |
gcaatatgcaaaggagtatcaacaaatggtattaaat |
311 |
Q |
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| T |
4818977 |
gcaatatgcaaaggagtttcaacaaatggtattaaat |
4818941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 12212 - 12286
Alignment:
| Q |
206 |
caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaata |
280 |
Q |
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|||||||||||| ||||| |||||||| |||||||| ||| | ||||| | | |||||||||||| |||||||| |
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| T |
12212 |
caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaata |
12286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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