View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_33 (Length: 381)
Name: NF0669_low_33
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 45666985 - 45667339
Alignment:
| Q |
1 |
ccgttcataaaagctggcttccacacaccacgtgttacttcagctgataagtagcttacaatagttgccaaagatgctggaagaaaatccgcaatatctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666985 |
ccgttcataaaagctggcttccacacaccacgtgttacttcagctgataagtagcttacaatagttgccaaagatgctggaagaaaatccgcaatatctt |
45667084 |
T |
|
| Q |
101 |
tgagacctgagataagaaggaggcacatttaggaaaacaacttaaaaaacaaatgattagtatccaaaatagcttgtttctgcaactgcaacagtcaacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45667085 |
tgagacctgagataagaaggaggcacatttaggaaaacaacttaaaaaacaaatgattagtatccaaaatagcttgtttctgcaactgcaacagtcaacg |
45667184 |
T |
|
| Q |
201 |
gtggaactaaggtacaaaattgataaaagcatgtttctgtgtttctgcaattgattggttcttcatttatacatttttgcacttcttagtttgtgtttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45667185 |
gtggaactaaggtacaaaattgataaaagcatgtttctgtgtttctgcaattaattggttcttcatttatacatttttgcacttcttagtttgtgtttct |
45667284 |
T |
|
| Q |
301 |
gcatttctacctttgtattcacccagtttctgcgtttcaggcttagtttttgtgg |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45667285 |
gcatttctacctttgtattcacccagtttctgcgtttcaggcttagtttttgtgg |
45667339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 7288693 - 7288608
Alignment:
| Q |
4 |
ttcataaaagctggcttccacacaccacgtgttacttcagctgataagtagcttacaatagttgccaaagatgctggaagaaaatc |
89 |
Q |
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|||||||| ||||| ||||| || || || ||||||||||| || ||||| |||| || ||||||| |||||| ||||||||||| |
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| T |
7288693 |
ttcataaatgctggtttccaaactcctcgagttacttcagcagaaaagtaacttattatggttgccagagatgcgggaagaaaatc |
7288608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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