View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_34 (Length: 381)

Name: NF0669_low_34
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_34
NF0669_low_34
[»] chr2 (23 HSPs)
chr2 (37-192)||(6760790-6760946)
chr2 (230-381)||(6759761-6759913)
chr2 (22-73)||(28846714-28846765)
chr2 (22-73)||(39715015-39715066)
chr2 (22-73)||(42327397-42327448)
chr2 (22-72)||(6859314-6859364)
chr2 (22-72)||(42860372-42860422)
chr2 (24-65)||(25637182-25637223)
chr2 (22-93)||(12994378-12994450)
chr2 (22-93)||(21213771-21213843)
chr2 (25-73)||(41202273-41202321)
chr2 (22-73)||(3001402-3001453)
chr2 (22-73)||(19244132-19244183)
chr2 (22-73)||(29197378-29197429)
chr2 (22-65)||(29503302-29503345)
chr2 (26-73)||(34041594-34041641)
chr2 (22-73)||(37480098-37480149)
chr2 (22-72)||(4262304-4262354)
chr2 (23-65)||(12801320-12801362)
chr2 (322-363)||(26833820-26833861)
chr2 (22-66)||(14500307-14500351)
chr2 (25-73)||(23230610-23230658)
chr2 (22-73)||(42922437-42922489)
[»] chr4 (33 HSPs)
chr4 (22-89)||(43623446-43623514)
chr4 (22-66)||(39509100-39509144)
chr4 (22-73)||(38869791-38869842)
chr4 (22-73)||(47044740-47044791)
chr4 (24-73)||(24827848-24827897)
chr4 (22-89)||(7292800-7292868)
chr4 (22-89)||(21660146-21660214)
chr4 (22-89)||(21668910-21668978)
chr4 (25-73)||(43728418-43728466)
chr4 (25-73)||(51948503-51948551)
chr4 (22-73)||(13015450-13015501)
chr4 (22-69)||(28635723-28635770)
chr4 (22-65)||(30938221-30938264)
chr4 (22-73)||(37109353-37109404)
chr4 (22-61)||(41346965-41347004)
chr4 (22-73)||(42644912-42644963)
chr4 (22-72)||(23377980-23378030)
chr4 (22-64)||(40813320-40813362)
chr4 (22-71)||(2622397-2622446)
chr4 (22-73)||(7949456-7949507)
chr4 (22-57)||(9936963-9936998)
chr4 (22-73)||(19238579-19238630)
chr4 (22-73)||(25869579-25869630)
chr4 (22-73)||(55427202-55427253)
chr4 (23-73)||(9241028-9241078)
chr4 (22-72)||(12821992-12822042)
chr4 (24-73)||(17618304-17618353)
chr4 (22-71)||(37274461-37274510)
chr4 (26-71)||(51954139-51954184)
chr4 (22-58)||(2185034-2185070)
chr4 (22-58)||(8306523-8306559)
chr4 (22-66)||(46329194-46329238)
chr4 (29-65)||(53496908-53496944)
[»] scaffold1367 (1 HSPs)
scaffold1367 (22-73)||(842-893)
[»] scaffold0299 (1 HSPs)
scaffold0299 (22-73)||(11551-11602)
[»] chr5 (25 HSPs)
chr5 (22-73)||(16773830-16773881)
chr5 (29-73)||(14495814-14495858)
chr5 (29-73)||(1410668-1410712)
chr5 (22-66)||(22020864-22020908)
chr5 (22-73)||(29075804-29075855)
chr5 (26-65)||(29692392-29692431)
chr5 (22-66)||(84854-84898)
chr5 (22-66)||(41165631-41165675)
chr5 (26-73)||(87429-87476)
chr5 (26-65)||(4793094-4793133)
chr5 (22-73)||(6844752-6844803)
chr5 (25-72)||(9842851-9842898)
chr5 (22-73)||(21549139-21549190)
chr5 (22-73)||(21589311-21589362)
chr5 (22-73)||(30109310-30109361)
chr5 (22-61)||(43442231-43442270)
chr5 (22-71)||(14285186-14285235)
chr5 (25-89)||(30883203-30883268)
chr5 (22-71)||(36958124-36958173)
chr5 (25-89)||(43241687-43241752)
chr5 (25-65)||(12883871-12883911)
chr5 (37-73)||(15641809-15641845)
chr5 (34-66)||(17761369-17761401)
chr5 (22-89)||(34984812-34984880)
chr5 (22-66)||(37258368-37258412)
[»] chr3 (38 HSPs)
chr3 (22-73)||(4844513-4844564)
chr3 (22-73)||(4870209-4870260)
chr3 (22-66)||(44743857-44743901)
chr3 (22-73)||(2667885-2667936)
chr3 (22-73)||(4222164-4222215)
chr3 (22-73)||(51903880-51903931)
chr3 (22-71)||(10445141-10445190)
chr3 (21-73)||(9557343-9557395)
chr3 (22-66)||(30311336-30311380)
chr3 (22-89)||(36720387-36720455)
chr3 (25-72)||(13808890-13808937)
chr3 (22-73)||(14339633-14339684)
chr3 (22-73)||(29563923-29563974)
chr3 (22-73)||(47454619-47454670)
chr3 (25-71)||(8501578-8501624)
chr3 (22-72)||(37051296-37051346)
chr3 (22-68)||(39253725-39253771)
chr3 (26-71)||(31520611-31520656)
chr3 (22-63)||(52769985-52770026)
chr3 (21-73)||(11612322-11612374)
chr3 (22-93)||(12761514-12761586)
chr3 (22-66)||(15048063-15048107)
chr3 (22-66)||(28703406-28703450)
chr3 (22-73)||(10499111-10499162)
chr3 (22-73)||(21960574-21960625)
chr3 (37-72)||(31788987-31789022)
chr3 (22-73)||(37788467-37788518)
chr3 (26-73)||(46518651-46518698)
chr3 (22-72)||(11090167-11090217)
chr3 (26-72)||(27259185-27259231)
chr3 (22-60)||(45229270-45229308)
chr3 (32-73)||(28531070-28531111)
chr3 (29-66)||(31608533-31608570)
chr3 (29-74)||(47860778-47860823)
chr3 (26-66)||(7975448-7975488)
chr3 (26-89)||(17108904-17108968)
chr3 (22-66)||(47279406-47279450)
chr3 (26-89)||(49494152-49494216)
[»] chr1 (39 HSPs)
chr1 (22-72)||(12587294-12587344)
chr1 (22-89)||(15786322-15786390)
chr1 (22-72)||(12259284-12259334)
chr1 (25-73)||(9165200-9165248)
chr1 (22-73)||(7219920-7219971)
chr1 (22-73)||(8177184-8177235)
chr1 (22-73)||(33700775-33700826)
chr1 (22-73)||(51703802-51703853)
chr1 (22-73)||(51814517-51814568)
chr1 (26-72)||(9964462-9964508)
chr1 (30-74)||(2069678-2069721)
chr1 (22-66)||(2799892-2799936)
chr1 (22-66)||(9117149-9117193)
chr1 (22-89)||(16169980-16170048)
chr1 (26-89)||(25297778-25297842)
chr1 (22-73)||(6650618-6650669)
chr1 (22-73)||(8904437-8904488)
chr1 (22-73)||(12662305-12662356)
chr1 (22-73)||(16893417-16893468)
chr1 (30-69)||(17439944-17439983)
chr1 (22-73)||(19528329-19528380)
chr1 (22-73)||(27223132-27223183)
chr1 (22-73)||(31383800-31383851)
chr1 (26-73)||(47720853-47720900)
chr1 (26-73)||(47727845-47727892)
chr1 (26-73)||(47753737-47753784)
chr1 (22-73)||(52336776-52336827)
chr1 (22-72)||(521242-521292)
chr1 (22-72)||(3265948-3265998)
chr1 (39-73)||(44046167-44046201)
chr1 (26-66)||(952541-952581)
chr1 (30-74)||(2074024-2074067)
chr1 (22-66)||(6122824-6122868)
chr1 (30-66)||(12370193-12370229)
chr1 (22-70)||(24216997-24217044)
chr1 (25-73)||(40257422-40257470)
chr1 (29-65)||(41508862-41508898)
chr1 (29-73)||(44126418-44126462)
chr1 (25-73)||(52116786-52116834)
[»] scaffold0258 (1 HSPs)
scaffold0258 (22-89)||(15325-15393)
[»] chr7 (32 HSPs)
chr7 (22-89)||(22760869-22760937)
chr7 (22-73)||(48771961-48772012)
chr7 (22-66)||(9871288-9871332)
chr7 (22-66)||(45709710-45709754)
chr7 (22-73)||(8108604-8108655)
chr7 (22-73)||(20335833-20335884)
chr7 (22-73)||(25590634-25590685)
chr7 (22-73)||(26459412-26459463)
chr7 (25-72)||(26703149-26703196)
chr7 (22-68)||(3174955-3175001)
chr7 (23-73)||(7801203-7801253)
chr7 (22-60)||(9183193-9183231)
chr7 (22-72)||(23552142-23552192)
chr7 (22-71)||(17041014-17041063)
chr7 (28-73)||(21854571-21854616)
chr7 (24-73)||(41519268-41519317)
chr7 (22-89)||(43215190-43215258)
chr7 (16-63)||(21410706-21410753)
chr7 (30-73)||(25021345-25021388)
chr7 (22-73)||(25655230-25655281)
chr7 (22-73)||(37085551-37085602)
chr7 (22-73)||(43590930-43590981)
chr7 (25-54)||(27776214-27776243)
chr7 (22-71)||(29916810-29916859)
chr7 (22-66)||(5934151-5934195)
chr7 (22-89)||(7499926-7499994)
chr7 (22-66)||(9608631-9608675)
chr7 (22-66)||(9836203-9836247)
chr7 (22-89)||(18056777-18056845)
chr7 (22-66)||(29785303-29785347)
chr7 (22-70)||(42814887-42814934)
chr7 (22-66)||(49050493-49050537)
[»] chr6 (18 HSPs)
chr6 (22-89)||(33549110-33549178)
chr6 (22-73)||(24641192-24641243)
chr6 (22-73)||(34786456-34786507)
chr6 (22-99)||(30127396-30127474)
chr6 (22-93)||(11423568-11423640)
chr6 (22-73)||(12234509-12234560)
chr6 (22-61)||(13227160-13227199)
chr6 (26-73)||(31622997-31623044)
chr6 (37-73)||(9433607-9433643)
chr6 (22-66)||(20213071-20213115)
chr6 (22-66)||(22107094-22107138)
chr6 (23-67)||(23910114-23910158)
chr6 (22-73)||(6385885-6385936)
chr6 (30-73)||(6776617-6776660)
chr6 (22-73)||(10338176-10338227)
chr6 (22-72)||(3172770-3172820)
chr6 (22-72)||(12633033-12633083)
chr6 (26-87)||(13661529-13661590)
[»] chr8 (24 HSPs)
chr8 (22-73)||(968385-968436)
chr8 (22-73)||(16852363-16852414)
chr8 (25-73)||(23361654-23361702)
chr8 (22-73)||(29858051-29858102)
chr8 (22-72)||(34628666-34628716)
chr8 (22-73)||(20994459-20994511)
chr8 (25-73)||(30483889-30483937)
chr8 (22-66)||(35641903-35641947)
chr8 (22-73)||(3624603-3624654)
chr8 (22-73)||(7140732-7140783)
chr8 (22-73)||(11492075-11492126)
chr8 (22-73)||(19703489-19703540)
chr8 (22-73)||(35690066-35690117)
chr8 (22-73)||(38661902-38661953)
chr8 (22-72)||(31087260-31087310)
chr8 (28-73)||(2203515-2203560)
chr8 (25-65)||(4830518-4830558)
chr8 (25-73)||(6536543-6536591)
chr8 (40-72)||(6569791-6569823)
chr8 (22-66)||(11819806-11819850)
chr8 (22-58)||(11928733-11928769)
chr8 (22-70)||(22193366-22193414)
chr8 (22-66)||(27750760-27750804)
chr8 (22-70)||(35583625-35583673)
[»] scaffold0194 (1 HSPs)
scaffold0194 (22-73)||(13048-13099)
[»] scaffold0070 (1 HSPs)
scaffold0070 (22-73)||(42522-42573)
[»] scaffold0291 (1 HSPs)
scaffold0291 (22-62)||(2472-2512)
[»] scaffold0211 (1 HSPs)
scaffold0211 (22-73)||(24076-24127)
[»] scaffold0122 (1 HSPs)
scaffold0122 (22-73)||(6921-6972)
[»] scaffold0044 (1 HSPs)
scaffold0044 (22-73)||(92970-93021)
[»] scaffold0009 (1 HSPs)
scaffold0009 (22-73)||(19849-19900)
[»] scaffold0118 (1 HSPs)
scaffold0118 (25-73)||(41638-41686)
[»] scaffold0047 (1 HSPs)
scaffold0047 (22-89)||(14974-15041)
[»] scaffold0021 (1 HSPs)
scaffold0021 (37-73)||(157004-157040)
[»] scaffold0002 (1 HSPs)
scaffold0002 (25-73)||(94976-95024)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 6760946 - 6760790
Alignment:
Q  37 tcgaggaggagcacactcccagatcccaagtcaatac-acaagactaacccaagcgggctaaatatatacgtcacacatttacattcaatttaaatatat 135  Q
    |||| |||||||| |||||||||||||||  |||||| || |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  6760946 tcgatgaggagcatactcccagatcccaaaccaatactaccagaccaacccaagtgggctaaatatatacgtcacatatttacattcaatttaaatatat 6760847  T
Q  136 acgtcatcaattatattatatggtatacaagtcagacaaatcttccttccatcacat 192  Q
    ||| ||||||||||||||||||||| |||||||| |||| |||||||||||||||||    
T  6760846 acgccatcaattatattatatggtacacaagtcaaacaagtcttccttccatcacat 6760790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 230 - 381
Target Start/End: Complemental strand, 6759913 - 6759761
Alignment:
Q  230 ttagtttttattattagattaataaatttcacaattttatcaaatgagatacaatgtaa-ttattgagtcaatagtnnnnnnnttatttgtacataatac 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||||||    
T  6759913 ttagtttttattattagattaataaatttcacaattttatcaaatgagatacaatgtaatttattgagtcaatagtaaaaaaaacatttgtacataatac 6759814  T
Q  329 aatatcattttatttgtatatgttagacaaagtctttgcaatttttcacaagt 381  Q
    ||||||||||||||| ||||||||||||||||||| | || ||||||||||||    
T  6759813 aatatcattttatttatatatgttagacaaagtctgtacattttttcacaagt 6759761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 28846765 - 28846714
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  28846765 atcgaacctgagacatcgaggaggagcacactcccaggtcccaagtcaatac 28846714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 39715066 - 39715015
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  39715066 atcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaatac 39715015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 42327397 - 42327448
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | |||||||||||||||||||| ||||||| ||||||    
T  42327397 atcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 42327448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 6859314 - 6859364
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||||||||||||| || |||||||||||||||| ||| ||||||||||    
T  6859314 atcgaacctgagactttgaagaggagcacactcccatatcacaagtcaata 6859364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 42860422 - 42860372
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    ||||||| |||||| |||||||||||||||||||||| || ||||||||||    
T  42860422 atcgaacttgagacctcgaggaggagcacactcccaggtctcaagtcaata 42860372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 25637223 - 25637182
Alignment:
Q  24 cgaacctgagacttcgaggaggagcacactcccagatcccaa 65  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  25637223 cgaacctgagacctcgagaaggagcacactcccagatcccaa 25637182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 12994378 - 12994450
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaagcggg 93  Q
    ||||||| |||||| |  ||||||||||||||||||| ||||||||||||| ||| |||| ||| ||||||||    
T  12994378 atcgaacttgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaagcggg 12994450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 21213843 - 21213771
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaagcggg 93  Q
    |||||||||||||| || ||||||| ||||||||||| ||||||| ||||| ||| |||| |||||| |||||    
T  21213843 atcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaacccatgcggg 21213771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 41202321 - 41202273
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||| |||||||||||||||||| ||||||||||| || ||||||||    
T  41202321 gaacctaagacttcgaggaggagcatactcccagatctcaggtcaatac 41202273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 3001453 - 3001402
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||  || |||||||||||||||| ||||| |||||||||||    
T  3001453 atcgaacctgagatctcaaggaggagcacactcctagatctcaagtcaatac 3001402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 19244183 - 19244132
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | | |||||||||||||| ||| ||||||||||||||    
T  19244183 atcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaatac 19244132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 29197378 - 29197429
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| |||||| || ||||||||||||||||||  ||||||||||||||    
T  29197378 atcgaacatgagacatcaaggaggagcacactcccaagtcccaagtcaatac 29197429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 29503345 - 29503302
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaa 65  Q
    |||||||||||||| | |||||||||||||||||||| ||||||    
T  29503345 atcgaacctgagaccttgaggaggagcacactcccaggtcccaa 29503302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 34041594 - 34041641
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||| | |||||||||||||||| ||||||| ||||||||||    
T  34041594 aacctgagaccttgaggaggagcacactctcagatcctaagtcaatac 34041641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 37480149 - 37480098
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | |||||||||||||||| ||| ||||||| ||||||    
T  37480149 atcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatac 37480098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 4262304 - 4262354
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||||||||||| | ||||||||||||||| |||| ||||||| |||||    
T  4262304 atcgaacctgagaccttgaggaggagcacactgccaggtcccaagccaata 4262354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 12801362 - 12801320
Alignment:
Q  23 tcgaacctgagacttcgaggaggagcacactcccagatcccaa 65  Q
    ||||||||||||||| ||||||||||| || ||||||||||||    
T  12801362 tcgaacctgagactttgaggaggagcatacccccagatcccaa 12801320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 26833861 - 26833820
Alignment:
Q  322 ataatacaatatcattttatttgtatatgttagacaaagtct 363  Q
    ||||||||| | ||||||||||||||||||||||| ||||||    
T  26833861 ataatacaaaaccattttatttgtatatgttagactaagtct 26833820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 14500351 - 14500307
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||| ||||||| | ||||||||||||||||||||||| ||||    
T  14500351 atcgaatctgagacctagaggaggagcacactcccagatctcaag 14500307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 23230610 - 23230658
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||  |||| |||||||||||||||||||| |||||| |||||||    
T  23230610 gaacctggaactttgaggaggagcacactcccagttcccaaatcaatac 23230658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 42922489 - 42922437
Alignment:
Q  22 atcgaacctgagac-ttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| || |||||||||||||||||||| | ||||| ||||||    
T  42922489 atcgaacctgagacctttgaggaggagcacactcccaggttccaagccaatac 42922437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 43623446 - 43623514
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||| |||||||||||||    
T  43623446 atcgaacctgagacttcaaggaggagcacactccctgatctcaagtcaatatcactagactaacccaag 43623514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 39509144 - 39509100
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  39509144 atcgaacctgagacctcgaggaggagcacactcccagatcccaag 39509100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 38869842 - 38869791
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | |||||||||||||||||||||||||||| ||||||    
T  38869842 atcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 38869791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 47044791 - 47044740
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||||||||||    
T  47044791 atcgaacctgagacctcgaggaggagcaaactctcagatcccaagtcaatac 47044740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 24827897 - 24827848
Alignment:
Q  24 cgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  24827897 cgaacctgagacctcgaggaggagcgcactcccaggtcccaagtcaatac 24827848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 7292800 - 7292868
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||||||||||||||| |||||||||||||||||||| | ||||| ||||| ||| |||| ||||||||    
T  7292800 atcgaacctgagactttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaag 7292868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 21660146 - 21660214
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    ||||||| |||||| ||||||| ||||||||||||||||| |||||||||| ||| |||| ||||||||    
T  21660146 atcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaag 21660214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 21668910 - 21668978
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    ||||||| |||||| ||||||| ||||||||||||||||| |||||||||| ||| |||| ||||||||    
T  21668910 atcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaag 21668978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 43728466 - 43728418
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  43728466 gaacctgagactttgaggaggagcacactcccagatcataagtcaatac 43728418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 51948551 - 51948503
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  51948551 gaacctgagacctcgaggaggggcacactcctagatcccaagtcaatac 51948503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 13015501 - 13015450
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||| ||||||    
T  13015501 atcgaacatgagacttcgaggaggagcacactcccaagtcccaagccaatac 13015450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 28635770 - 28635723
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtca 69  Q
    ||||||||| |||| || ||||||||||||||||||||||||||||||    
T  28635770 atcgaacctaagacctccaggaggagcacactcccagatcccaagtca 28635723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 30938221 - 30938264
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaa 65  Q
    |||||||||||||| ||||||||||||||||||| |||||||||    
T  30938221 atcgaacctgagacctcgaggaggagcacactccaagatcccaa 30938264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 37109353 - 37109404
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | |||||||||||||||||||| ||||||| ||||||    
T  37109353 atcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 37109404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 41346965 - 41347004
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatc 61  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  41346965 atcgaacctgagacttcgaggaggagcatactcccagatc 41347004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 42644912 - 42644963
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||||| ||||| || ||||||| ||||||||||||||||||    
T  42644912 atcgaacctgagactttgaggaagaacacactctcagatcccaagtcaatac 42644963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 23378030 - 23377980
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||||||||||| | |||||||||||||||||||| ||||||| |||||    
T  23378030 atcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaata 23377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 40813320 - 40813362
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatccca 64  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  40813320 atcgaacctgagacttcgaaaaggagcacactcccagatccca 40813362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 2622397 - 2622446
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 71  Q
    |||||||||||||| | |||||||||||||||||||| ||||||| ||||    
T  2622397 atcgaacctgagacatggaggaggagcacactcccaggtcccaagccaat 2622446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 7949456 - 7949507
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | ||||||||||||||||| || ||||||| ||||||    
T  7949456 atcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatac 7949507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 9936963 - 9936998
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactccca 57  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9936963 atcgaacctgaaacttcgaggaggagcacactccca 9936998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 19238579 - 19238630
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||| ||||| |||||||||||||||||||||  ||||||| ||||||    
T  19238579 atcgaacccgagacctcgaggaggagcacactcccaagtcccaagccaatac 19238630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 25869579 - 25869630
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| | |||||| |||||||||||||||| |||||| |||||||||||    
T  25869579 atcgaacataagactttgaggaggagcacactctcagatctcaagtcaatac 25869630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 55427202 - 55427253
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| ||||| ||||||| |||||||| ||||||| ||||||    
T  55427202 atcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaatac 55427253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 9241028 - 9241078
Alignment:
Q  23 tcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||| |||| ||||| ||||||||||| |||||||||||| ||||||    
T  9241028 tcgaacctcagacctcgagcaggagcacactaccagatcccaagccaatac 9241078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 12822042 - 12821992
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||| ||||||| | ||  ||||||||||||||||||||||||||||||    
T  12822042 atcgaatctgagaccttgaacaggagcacactcccagatcccaagtcaata 12821992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 17618353 - 17618304
Alignment:
Q  24 cgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||| |||||| |||||||||||||||||||||| || |||| ||||||    
T  17618353 cgaacatgagacctcgaggaggagcacactcccaggtctcaagccaatac 17618304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 37274461 - 37274510
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 71  Q
    ||||||||| |||| | |||||||||||||||||||| ||||||| ||||    
T  37274461 atcgaacctaagaccttgaggaggagcacactcccaggtcccaagccaat 37274510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 51954184 - 51954139
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaat 71  Q
    |||||||||| ||||||||||||| |||||||  ||||||||||||    
T  51954184 aacctgagacctcgaggaggagcatactcccaagtcccaagtcaat 51954139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 2185034 - 2185070
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccag 58  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  2185034 atcgaacctgagactttgagaaggagcacactcccag 2185070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 8306559 - 8306523
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccag 58  Q
    ||||||| | |||||||||||||||||||||||||||    
T  8306559 atcgaacttaagacttcgaggaggagcacactcccag 8306523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 46329238 - 46329194
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    ||||||||||| || | |||||||||||||||||||| |||||||    
T  46329238 atcgaacctgataccttgaggaggagcacactcccaggtcccaag 46329194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 53496944 - 53496908
Alignment:
Q  29 ctgagacttcgaggaggagcacactcccagatcccaa 65  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  53496944 ctgagactttgaggaggagcacactcccaggtcccaa 53496908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 842 - 893
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  842 atcgaacctgagacttcgaggaggagcacattcccagatcccaagccaatac 893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 11602 - 11551
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  11602 atcgaacctgagacctcgaggaggagcacactcccagatcccaagccaatac 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 16773881 - 16773830
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  16773881 atcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaatac 16773830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 14495814 - 14495858
Alignment:
Q  29 ctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  14495814 ctgagacctcgaggaggagcacactcccagatcccaagtcaatac 14495858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 1410668 - 1410712
Alignment:
Q  29 ctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||    
T  1410668 ctgagacctcgaggaggagcacactcccatatcccaagtcaatac 1410712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 22020864 - 22020908
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||| |||||||||| |||||||||||||||||||||||||||    
T  22020864 atcgaatctgagacttcaaggaggagcacactcccagatcccaag 22020908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 29075855 - 29075804
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| |||||  |||||||||||||||||||||||||||||| ||||||    
T  29075855 atcgaacatgagatctcgaggaggagcacactcccagatcccaagccaatac 29075804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 29692392 - 29692431
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaa 65  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  29692392 aacctgagactttgaggaggagcacactcccagatcccaa 29692431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 84898 - 84854
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||    
T  84898 atcgaacttgagaccttgaggaggagcacactcccagatcccaag 84854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 41165631 - 41165675
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||| || |||||||||| ||||||||||||||||||||||||    
T  41165631 atcgaatctaagacttcgagaaggagcacactcccagatcccaag 41165675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 87429 - 87476
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||| | |||||||||||||||||||||| ||||| ||||||    
T  87429 aacctgagaccttgaggaggagcacactcccagattccaaggcaatac 87476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 4793094 - 4793133
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaa 65  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  4793094 aacctgagacctcgaggaggagcacactcccaggtcccaa 4793133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 6844803 - 6844752
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||| |||| |||||||||| |||||||||| || ||||||||||||    
T  6844803 atcgaaccttagacctcgaggaggaacacactcccaaattccaagtcaatac 6844752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 9842851 - 9842898
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    ||||| ||||| |||||||||||||||||||||  |||||||||||||    
T  9842851 gaacccgagacctcgaggaggagcacactcccaagtcccaagtcaata 9842898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 21549139 - 21549190
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| ||||||||  ||||||||||||||||||| ||||||| ||||||    
T  21549139 atcgaacttgagactttaaggaggagcacactcccaggtcccaagccaatac 21549190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 21589362 - 21589311
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |||||||| |||| |||||||| ||||||| ||||||    
T  21589362 atcgaacctgagacatcgaggagtagcagactcccaggtcccaagccaatac 21589311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 30109310 - 30109361
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| || ||||||||||||||||||| || |||| ||||||    
T  30109310 atcgaacctgagacctcaaggaggagcacactcccaggtcacaagccaatac 30109361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 43442270 - 43442231
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatc 61  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  43442270 atcgaacctgagaccttgaggaggagcacactcccagatc 43442231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 14285235 - 14285186
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 71  Q
    |||||||||||||| | |||||||||||||||||||| | ||||| ||||    
T  14285235 atcgaacctgagaccttgaggaggagcacactcccaggttccaagccaat 14285186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 30883203 - 30883268
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||| |||||| | |||||||||||||||||||| ||||||| ||||| ||| |||| ||||||||    
T  30883203 gaacttgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaag 30883268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 36958124 - 36958173
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 71  Q
    ||||||||||||||||||| ||||| |||||||||| ||| |||| ||||    
T  36958124 atcgaacctgagacttcgatgaggaacacactcccaaatctcaagccaat 36958173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 43241687 - 43241752
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    ||||||||||| || |||| | ||||||||| |||||||||||||||| ||| |||| ||||||||    
T  43241687 gaacctgagacctcaaggaagggcacactccaagatcccaagtcaataccactagaccaacccaag 43241752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 12883911 - 12883871
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaa 65  Q
    |||| |||||| || ||||||||||||||||||||||||||    
T  12883911 gaacatgagacctcaaggaggagcacactcccagatcccaa 12883871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 15641809 - 15641845
Alignment:
Q  37 tcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  15641809 tcgaggacgagcacactcccaggtcccaagtcaatac 15641845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 17761369 - 17761401
Alignment:
Q  34 acttcgaggaggagcacactcccagatcccaag 66  Q
    ||||| |||||||||||||||||||||||||||    
T  17761369 acttcaaggaggagcacactcccagatcccaag 17761401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 34984880 - 34984812
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    ||||||||| |||| | |||||||||||||||||||| | ||||| ||||| ||| |||| ||||||||    
T  34984880 atcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaag 34984812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 37258368 - 37258412
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    ||||||||||| || | ||||||||||||||||| ||||||||||    
T  37258368 atcgaacctgaaaccttgaggaggagcacactcctagatcccaag 37258412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 4844513 - 4844564
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  4844513 atcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaatac 4844564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 4870209 - 4870260
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  4870209 atcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaatac 4870260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 44743857 - 44743901
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  44743857 atcgaacctgagacctcgaggaggagcacactcccagatcccaag 44743901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 2667936 - 2667885
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  2667936 atcgaacctgagacctcgaggaagagcacactcccagatcccaagccaatac 2667885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 4222215 - 4222164
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  4222215 atcgaacctaagactttgaggaggagcacactcccagatcccaagccaatac 4222164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 51903880 - 51903931
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  51903880 atcgaacctgagaccacgaggaggagcacactcccagatcccaagccaatac 51903931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 10445141 - 10445190
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 71  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| ||||    
T  10445141 atcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaat 10445190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 9557395 - 9557343
Alignment:
Q  21 catcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||||  |||||||||||||||||| ||||||||||| ||||||    
T  9557395 catcgaacctgagatctcgaggaggagcacactctcagatcccaagccaatac 9557343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 30311380 - 30311336
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| | ||||||||||||||||||||||||||||    
T  30311380 atcgaacctgagaccttgaggaggagcacactcccagatcccaag 30311336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 36720455 - 36720387
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    ||||||||||| || ||||||||||||||||||||| |||||||| ||||| ||| |||| ||||||||    
T  36720455 atcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaataccaccagaccaacccaag 36720387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 13808890 - 13808937
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  13808890 gaacctgagacctagaggaggagcacactgccagatcccaagtcaata 13808937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 14339684 - 14339633
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | ||||||||||||||||||| |||||||| ||||||    
T  14339684 atcgaacctgagacattgaggaggagcacactcccaaatcccaagccaatac 14339633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 29563974 - 29563923
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||| ||||||    
T  29563974 atcgaacctgagacttcgaggagaagcacacttccagatctcaagccaatac 29563923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 47454619 - 47454670
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||| ||||||    
T  47454619 atcgaacctgagacctcgaggaggagcacactccaagatctcaagccaatac 47454670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 8501578 - 8501624
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 71  Q
    |||||||| |||| ||||||||||||||||||||||| |||||||||    
T  8501578 gaacctgaaactttgaggaggagcacactcccagatctcaagtcaat 8501624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 37051296 - 37051346
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    ||||||||||||||||  ||||||| |||||||||||||||||| ||||||    
T  37051296 atcgaacctgagactttaaggaggaacacactcccagatcccaaatcaata 37051346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 39253771 - 39253725
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtc 68  Q
    |||||||||||||| | || |||||||||||||||||||||||||||    
T  39253771 atcgaacctgagaccttgaagaggagcacactcccagatcccaagtc 39253725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 31520611 - 31520656
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaat 71  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||||    
T  31520611 aacctaagacctcgaggaggagcacactcccagatcccaagccaat 31520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 52769985 - 52770026
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatccc 63  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  52769985 atcgaacctgagacctcaaggaggagcacactcccagatccc 52770026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 11612374 - 11612322
Alignment:
Q  21 catcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||||| |  ||||||||||||||||||| |||||||| |||||    
T  11612374 catcgaacctgagaccttaaggaggagcacactcccagctcccaagtgaatac 11612322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 12761586 - 12761514
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaagcggg 93  Q
    |||||||||||||  || ||||||| ||||||||||| ||||||||||||| ||| |||| |||||| |||||    
T  12761586 atcgaacctgagagctcaaggaggaacacactcccaggtcccaagtcaataccaccagaccaacccatgcggg 12761514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 15048063 - 15048107
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||    
T  15048063 atcgaacctgagaccttgaggaggagcacattcccagatcccaag 15048107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 28703406 - 28703450
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| | || |||||||||||||||||||||||||    
T  28703406 atcgaacctgagaccttgaagaggagcacactcccagatcccaag 28703450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 10499111 - 10499162
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| || |||| ||||| |||||||||||||||| ||||||    
T  10499111 atcgaacctgagacctcaaggaagagcagactcccagatcccaagccaatac 10499162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 21960625 - 21960574
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||| ||||||| |||||||||||||||||| ||| ||||||| ||||||    
T  21960625 atcgaatctgagacctcgaggaggagcacactctcaggtcccaagccaatac 21960574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 31788987 - 31789022
Alignment:
Q  37 tcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||||||||||||||||||||||||||| |||||    
T  31788987 tcgaggaggagcacactcccagatcccaagccaata 31789022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 37788467 - 37788518
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | ||||||||||||||||| || | ||||||||||||    
T  37788467 atcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaatac 37788518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 46518698 - 46518651
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| || | |||||||||||||||||||||||||||| ||||||    
T  46518698 aacctgaaaccttgaggaggagcacactcccagatcccaagccaatac 46518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 11090167 - 11090217
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||| || |||| ||||||||||||||| |||||||||||||| |||||    
T  11090167 atcgaaactaagacctcgaggaggagcacattcccagatcccaagccaata 11090217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 27259231 - 27259185
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    ||||||| || |||||||||||||||||||||| ||||||| |||||    
T  27259231 aacctgaaacctcgaggaggagcacactcccaggtcccaagccaata 27259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 45229308 - 45229270
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagat 60  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  45229308 atcgaacctgagaccacgaggaggagcacactcccagat 45229270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 28531070 - 28531111
Alignment:
Q  32 agacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  28531070 agacctcgaggaggagcatactcccagatcccaagccaatac 28531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 31608533 - 31608570
Alignment:
Q  29 ctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  31608533 ctgagacctcgaggaggagcacactcccagatctcaag 31608570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 47860823 - 47860778
Alignment:
Q  29 ctgagacttcgaggaggagcacactcccagatcccaagtcaataca 74  Q
    ||||||||| ||||||||||||||||| |||||| ||| |||||||    
T  47860823 ctgagactttgaggaggagcacactcctagatccaaagccaataca 47860778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 7975488 - 7975448
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  7975488 aacctaagaccttgaggaggagcacactcccagatcccaag 7975448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 17108904 - 17108968
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||||||||| | ||||||||||||||||||| ||| | |||||||| ||| | |||||||||||    
T  17108904 aacctgagaccttgaggaggagcacactcccacatctccagtcaataccaccaaactaacccaag 17108968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 47279406 - 47279450
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    ||||||| |||||| |  |||||||||||||||||||||||||||    
T  47279406 atcgaacatgagaccttaaggaggagcacactcccagatcccaag 47279450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 49494152 - 49494216
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||||||||| ||||||| ||||||||||||| ||  |||||||||| ||| || ||||||||||    
T  49494152 aacctgagacctcgaggaagagcacactcccaaatttcaagtcaataccactaggctaacccaag 49494216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 12587344 - 12587294
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  12587344 atcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaata 12587294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 15786322 - 15786390
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac-acaagactaacccaag 89  Q
    |||||||||||||| | |||||||||||||||||||||||||||| |||||| || |||| ||||||||    
T  15786322 atcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaacccaag 15786390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 12259334 - 12259284
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  12259334 atcgaacttgagacttcgaggaggagcacactcccaaatcccaagttaata 12259284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 9165200 - 9165248
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  9165200 gaacctgagactttgaggaggagcacactcccaggtcccaagccaatac 9165248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 7219920 - 7219971
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| ||||||||    
T  7219920 atcgaacctgagacttcgaggaggagcacactctcatgtcccaggtcaatac 7219971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 8177184 - 8177235
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| || | |||||||||||||||||||||||||||| ||||||    
T  8177184 atcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaatac 8177235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 33700775 - 33700826
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | |||||||||||||||||||||| ||||| ||||||    
T  33700775 atcgaacctgagaccttgaggaggagcacactcccagattccaagccaatac 33700826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 51703853 - 51703802
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| |||| |||||||||||||||||||||| ||||| ||||||    
T  51703853 atcgaacctgaaactttgaggaggagcacactcccagattccaagccaatac 51703802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 51814568 - 51814517
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | |||||||||||||||| |||||| |||||||||||    
T  51814568 atcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaatac 51814517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 9964508 - 9964462
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||||||| | ||||| ||||||||||||||||||||||||||||    
T  9964508 aacctgagacattgaggaagagcacactcccagatcccaagtcaata 9964462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 2069721 - 2069678
Alignment:
Q  30 tgagacttcgaggaggagcacactcccagatcccaagtcaataca 74  Q
    |||||||||||||||||||||| | ||||||||||||||||||||    
T  2069721 tgagacttcgaggaggagcaca-tgccagatcccaagtcaataca 2069678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 2799936 - 2799892
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| | ||||||||||||||||||||||| ||||    
T  2799936 atcgaacctgagaccttgaggaggagcacactcccagatctcaag 2799892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 9117193 - 9117149
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| || |||||||||||||| ||||||||||||    
T  9117193 atcgaacctgagacctcaaggaggagcacacttccagatcccaag 9117149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 16169980 - 16170048
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    ||||||||||| || | |||||||| ||||||||||| ||||||||||||| ||| || ||||||||||    
T  16169980 atcgaacctgaaaccttgaggaggaacacactcccaggtcccaagtcaataccaccaggctaacccaag 16170048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 25297842 - 25297778
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    ||||| |||| |||||||||||||||||| ||||||| ||||||||| ||| |||| ||||||||    
T  25297842 aacctcagacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacccaag 25297778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 6650669 - 6650618
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | ||||||||||| |||||| ||||||||| ||||||    
T  6650669 atcgaacctgagacattgaggaggagcatactccccgatcccaagccaatac 6650618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 8904488 - 8904437
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| |||||| | |||||||||||||||| || |||||||||||||||    
T  8904488 atcgaacttgagaccttgaggaggagcacactcacatatcccaagtcaatac 8904437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 12662356 - 12662305
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| ||||||||||||||||| ||  ||| |||||||||||    
T  12662356 atcgaacctgagacatcgaggaggagcacacttccgtatcacaagtcaatac 12662305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 16893468 - 16893417
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| ||||||||||| ||||||||| ||| |||| ||||||    
T  16893468 atcgaacctgagacctcgaggaggagtacactcccaaatctcaagccaatac 16893417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 17439983 - 17439944
Alignment:
Q  30 tgagacttcgaggaggagcacactcccagatcccaagtca 69  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  17439983 tgagacctcgaggaggagcacactcccagatcctaagtca 17439944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 19528329 - 19528380
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | ||||||||||||||||  |||||||||| ||||||    
T  19528329 atcgaacctgagaccttgaggaggagcacactcatagatcccaagccaatac 19528380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 27223132 - 27223183
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | || || |||||||||||||||||| ||||||||||    
T  27223132 atcgaacctgagaccttgaagaagagcacactcccagatcctaagtcaatac 27223183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 31383800 - 31383851
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||||  | ||||||||||||||||||| ||||||| ||||||    
T  31383800 atcgaacctgagaccccaaggaggagcacactcccaggtcccaagccaatac 31383851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 47720900 - 47720853
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||| ||||||||||||||||| | ||| |||||||||||    
T  47720900 aacctgagactttgaggaggagcacactcctatatctcaagtcaatac 47720853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 47727892 - 47727845
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||| ||||||||||||||||| | ||| |||||||||||    
T  47727892 aacctgagactttgaggaggagcacactcctatatctcaagtcaatac 47727845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 47753784 - 47753737
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||| | ||||||||||||| ||| |||||||||||||||||    
T  47753784 aacctgagaccttgaggaggagcacagtcctagatcccaagtcaatac 47753737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 52336776 - 52336827
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||  |  ||||||||||||||||||||||||||| ||||||    
T  52336776 atcgaacctgagatcttaaggaggagcacactcccagatcccaagccaatac 52336827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 521292 - 521242
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    ||||||||||||||||  ||||||||||||| |||| ||| ||||||||||    
T  521292 atcgaacctgagactttaaggaggagcacacccccaaatctcaagtcaata 521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 3265998 - 3265948
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||||||||||| | |||||||||||||||||||  | |||||||||||    
T  3265998 atcgaacctgagaccttgaggaggagcacactcccaagttccaagtcaata 3265948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 44046167 - 44046201
Alignment:
Q  39 gaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||||||||||||||||| ||||||    
T  44046167 gaggaggagcacactcccagatcccaagccaatac 44046201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 952581 - 952541
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||| ||||| |||||||||||||| |||||||    
T  952581 aacctgagactttgaggatgagcacactcccaggtcccaag 952541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 2074067 - 2074024
Alignment:
Q  30 tgagacttcgaggaggagcacactcccagatcccaagtcaataca 74  Q
    |||||||||||||||||||||||  | ||||||||||||||||||    
T  2074067 tgagacttcgaggaggagcacac-gctagatcccaagtcaataca 2074024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 6122868 - 6122824
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| | |||||||||||||||||||  |||||||    
T  6122868 atcgaacctgagaccttgaggaggagcacactcccaagtcccaag 6122824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 12370229 - 12370193
Alignment:
Q  30 tgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||| |||||||||||||||||||||| |||||||    
T  12370229 tgagacctcgaggaggagcacactcccaggtcccaag 12370193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 24217044 - 24216997
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaa 70  Q
    |||||||||||||| | ||| ||||||||||||| ||||||||||||||    
T  24217044 atcgaacctgagaccttgag-aggagcacactccaagatcccaagtcaa 24216997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 40257470 - 40257422
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||| |||||| |||||||||||||||||||||| || |||| ||||||    
T  40257470 gaacttgagacctcgaggaggagcacactcccaggtctcaagccaatac 40257422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 41508898 - 41508862
Alignment:
Q  29 ctgagacttcgaggaggagcacactcccagatcccaa 65  Q
    ||||||| | |||||||||||||||||||||||||||    
T  41508898 ctgagaccttgaggaggagcacactcccagatcccaa 41508862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 44126462 - 44126418
Alignment:
Q  29 ctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| ||| |||||||||||||||||| ||||| ||||||||    
T  44126462 ctgagacctcgtggaggagcacactcccaggtcccaggtcaatac 44126418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 52116786 - 52116834
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| | |||||||||||||||||||  ||||||| ||||||    
T  52116786 gaacctgagacattgaggaggagcacactcccaagtcccaagccaatac 52116834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 15325 - 15393
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| ||||| ||| |||| ||||||||    
T  15325 atcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaag 15393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 22760937 - 22760869
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||||||| ||| |||| ||||||||    
T  22760937 atcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaag 22760869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 48772012 - 48771961
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| || ||||||||||||||||||||||||||| ||||||    
T  48772012 atcgaacctgagacctcaaggaggagcacactcccagatcccaagccaatac 48771961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 9871288 - 9871332
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||    
T  9871288 atcgaatctgagacttcgaggaggagcacactcccaaatcccaag 9871332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 45709710 - 45709754
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| |||||||||||||||||| |||||||||||    
T  45709710 atcgaacctgagacctcgaggaggagcacactctcagatcccaag 45709754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 8108655 - 8108604
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| || ||||||||| |||||||| |||||||||||||||    
T  8108655 atcgaacctgagacctcaaggaggagcgcactcccatatcccaagtcaatac 8108604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 20335833 - 20335884
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |||||||||||||||||||||  ||||||| ||||||    
T  20335833 atcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatac 20335884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 25590685 - 25590634
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||| ||||||    
T  25590685 atcgaacccgagacctcgaggaggagcacactcccagatctcaagccaatac 25590634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 26459412 - 26459463
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | |||||||||||||||||||| ||||||| ||||||    
T  26459412 atcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 26459463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 26703196 - 26703149
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  26703196 gaacctgagacctcgagaaggagcacactcccagatcccaagccaata 26703149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 3175001 - 3174955
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtc 68  Q
    |||||||||||||| |||||  |||||||||||||||||||||||||    
T  3175001 atcgaacctgagacctcgagatggagcacactcccagatcccaagtc 3174955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 7801253 - 7801203
Alignment:
Q  23 tcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||| | || ||||||||||||||||| ||||||||||||||    
T  7801253 tcgaacctgagaccttgaagaggagcacactcccaggtcccaagtcaatac 7801203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 9183193 - 9183231
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagat 60  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  9183193 atcgaacctgagactttgaggaggagcacactcccagat 9183231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 23552192 - 23552142
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    ||||||| |||||| | |||||||||||||||||||| |||||||||||||    
T  23552192 atcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaata 23552142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 17041014 - 17041063
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 71  Q
    |||||||||||||| | ||||||||||||||| |||||||||||| ||||    
T  17041014 atcgaacctgagaccttgaggaggagcacacttccagatcccaagccaat 17041063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 21854616 - 21854571
Alignment:
Q  28 cctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||| ||||||||||||||||||||||||| || ||||||    
T  21854616 cctgagactttgaggaggagcacactcccagatccctagccaatac 21854571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 41519268 - 41519317
Alignment:
Q  24 cgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||| | ||||||||||||||||| | |||||||||||||||    
T  41519268 cgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaatac 41519317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 43215258 - 43215190
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||||||||||||| | ||||||||||||||||| || ||||||| ||||| ||| |||| ||||||||    
T  43215258 atcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaag 43215190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 21410706 - 21410753
Alignment:
Q  16 gacatcatcgaacctgagacttcgaggaggagcacactcccagatccc 63  Q
    ||||| ||||||  ||||||||||||||||||||||||| ||||||||    
T  21410706 gacataatcgaatttgagacttcgaggaggagcacactctcagatccc 21410753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 25021345 - 25021388
Alignment:
Q  30 tgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||    
T  25021345 tgagactttgaggaggagcacactcccaggtcccaagccaatac 25021388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 25655230 - 25655281
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| || | |||||||| ||||||| ||||||||||||||||||    
T  25655230 atcgaacctgaaaccttgaggaggatcacactcacagatcccaagtcaatac 25655281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 37085551 - 37085602
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| || ||||||| ||||||||||||| |||||||| ||||||    
T  37085551 atcgaacctgaaacctcgaggatgagcacactcccaaatcccaagccaatac 37085602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 43590981 - 43590930
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | |||||||||||||||||||  ||||||| ||||||    
T  43590981 atcgaacctgagacattgaggaggagcacactcccaagtcccaagccaatac 43590930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 27776243 - 27776214
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactc 54  Q
    ||||||||||||||||||||||||||||||    
T  27776243 gaacctgagacttcgaggaggagcacactc 27776214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 29916810 - 29916859
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 71  Q
    |||||||||||||| | ||||||||||||||||  |||||||| ||||||    
T  29916810 atcgaacctgagaccttgaggaggagcacactcttagatcccacgtcaat 29916859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 5934195 - 5934151
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    ||||||| ||| || || |||||||||||||||||||||||||||    
T  5934195 atcgaacatgaaacctcaaggaggagcacactcccagatcccaag 5934151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 7499926 - 7499994
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||||||||||||| |||| |||||||| |||| ||| ||||||| ||||| ||| || ||||||||||    
T  7499926 atcgaacctgagacctcgaagaggagcaaactctcaggtcccaagccaatatcactaggctaacccaag 7499994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 9608631 - 9608675
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||  | ||||||||| ||||||||||||||||||    
T  9608631 atcgaacctgagatcttgaggaggaggacactcccagatcccaag 9608675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 9836203 - 9836247
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||  | ||||||||| ||||||||||||||||||    
T  9836203 atcgaacctgagatcttgaggaggaggacactcccagatcccaag 9836247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 18056777 - 18056845
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||||||||||||| |  |||||||||||||||| |   |||||||||||| ||| |||||||||||||    
T  18056777 atcgaacctgagaccttcaggaggagcacactccgaagacccaagtcaataccaccagactaacccaag 18056845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 29785303 - 29785347
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    ||||||| |||||| | ||||||||||||||| ||||||||||||    
T  29785303 atcgaacatgagaccttgaggaggagcacacttccagatcccaag 29785347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 42814934 - 42814887
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaa 70  Q
    ||||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  42814934 atcgaacctgagacttcaag-aggagcaaactccaagatcccaagtcaa 42814887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 49050493 - 49050537
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| || |||||||| |||||| |||||||||||    
T  49050493 atcgaacctgagacctcaaggaggagtacactcgcagatcccaag 49050537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 33549178 - 33549110
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| ||||| ||| |||| ||||||||    
T  33549178 atcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaag 33549110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 24641192 - 24641243
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||| | || |||||||||||||||||||||||||||||||||||||    
T  24641192 atcgaaccttaaacctcgaggaggagcacactcccagatcccaagtcaatac 24641243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 34786456 - 34786507
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| ||||||    
T  34786456 atcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 34786507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 30127474 - 30127396
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaagcgggctaaat 99  Q
    |||||||||||||| |||| |||||||||||||||||| |||||| ||||| ||| |||| |||||||| ||| |||||    
T  30127474 atcgaacctgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggttaaat 30127396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 11423640 - 11423568
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaagcggg 93  Q
    |||||||||||||| |||||||| |||| ||||||| |||||||||||||| ||| |||| | ||||||||||    
T  11423640 atcgaacctgagacctcgaggagaagcatactcccaaatcccaagtcaataccaccagaccagcccaagcggg 11423568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 12234509 - 12234560
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |||||  ||||||||||||||| ||||||||||||||    
T  12234509 atcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaatac 12234560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 13227160 - 13227199
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatc 61  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  13227160 atcgaacttgagacttcgaggaggagcacactcccagatc 13227199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 31622997 - 31623044
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||    
T  31622997 aacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 31623044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 9433607 - 9433643
Alignment:
Q  37 tcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9433607 tcgaggaagagcacactcccagatcccaagtcaatac 9433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 20213115 - 20213071
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| | |||||||||||||||||||| |||||||    
T  20213115 atcgaacctgagacattgaggaggagcacactcccaggtcccaag 20213071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 22107138 - 22107094
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| | |||||||||||||||||||| |||||||    
T  22107138 atcgaacctgagacattgaggaggagcacactcccaggtcccaag 22107094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 23910114 - 23910158
Alignment:
Q  23 tcgaacctgagacttcgaggaggagcacactcccagatcccaagt 67  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||    
T  23910114 tcgaacctgagaccttgaggaggagcacactcccaggtcccaagt 23910158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 6385936 - 6385885
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |  |||||||||||| |||||| ||||||||||||||    
T  6385936 atcgaacctgagaccttaaggaggagcacagtcccaggtcccaagtcaatac 6385885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 6776617 - 6776660
Alignment:
Q  30 tgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||    
T  6776617 tgagacatcgaggaggagcacacccccagatcccaagccaatac 6776660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 10338176 - 10338227
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | ||||||||||||||||| || ||||||| ||||||    
T  10338176 atcgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatac 10338227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 3172770 - 3172820
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||| ||||||| |||| |||||||| |||||||| |||||||||||||    
T  3172770 atcgaatctgagacctcgatgaggagcatactcccaggtcccaagtcaata 3172820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 12633083 - 12633033
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    ||||||| |||||  |||| |||||||||||||||| ||||||||||||||    
T  12633083 atcgaacatgagatctcgaagaggagcacactcccaaatcccaagtcaata 12633033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 13661590 - 13661529
Alignment:
Q  26 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatacacaagactaaccca 87  Q
    |||||||||| |||||||||||||||||||||  |  |||| |||||||| |||| ||||||    
T  13661590 aacctgagacctcgaggaggagcacactcccaagtgtcaagccaatacactagaccaaccca 13661529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 968436 - 968385
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| ||||||    
T  968436 atcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 968385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 16852414 - 16852363
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| ||||||    
T  16852414 atcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 16852363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 23361654 - 23361702
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  23361654 gaacctgagaccttgaggaggagcacactcccatatcccaagtcaatac 23361702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 29858051 - 29858102
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| |||||||||||||||||||| | ||||||| ||||||    
T  29858051 atcgaacctgagacctcgaggaggagcacactccctggtcccaagccaatac 29858102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 34628716 - 34628666
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||||||||||||| |||||| | ||||||||||||||||||| |||||    
T  34628716 atcgaacctgagactttgaggagaaacacactcccagatcccaagccaata 34628666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 20994459 - 20994511
Alignment:
Q  22 atcgaacctgagacttcgagg-aggagcacactcccagatcccaagtcaatac 73  Q
    ||||| |||||||||| |||| |||||||||||||||| ||||||||||||||    
T  20994459 atcgatcctgagactttgagggaggagcacactcccaggtcccaagtcaatac 20994511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 30483889 - 30483937
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||  ||||||||||||||||||| |||||||| ||||||    
T  30483889 gaacctgagactctgaggaggagcacactcccatatcccaagccaatac 30483937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 35641903 - 35641947
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| ||||||||||||||||||||| ||| ||||    
T  35641903 atcgaacctgagacatcgaggaggagcacactcccaaatctcaag 35641947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 3624654 - 3624603
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | || ||||||||||||||||| ||||||| ||||||    
T  3624654 atcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaatac 3624603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 7140783 - 7140732
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||| ||||||  |||||||||||||||| ||||||||||||| ||||||    
T  7140783 atcgaatctgagagctcgaggaggagcacacacccagatcccaagccaatac 7140732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 11492075 - 11492126
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||| |||| ||||| ||||||||||||||||||| |||| ||||||    
T  11492075 atcgaacctaagacctcgagaaggagcacactcccagatctcaagccaatac 11492126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 19703489 - 19703540
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | |||||||||||||||| ||| ||||||| ||||||    
T  19703489 atcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatac 19703540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 35690066 - 35690117
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | ||||||||||| || ||||||||||||| ||||||    
T  35690066 atcgaacctgagaccttgaggaggagcaaacacccagatcccaagccaatac 35690117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 38661953 - 38661902
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| ||||||||||| ||||||||||||| ||| || |||||||    
T  38661953 atcgaacctgaaacttcgaggagaagcacactcccaggtcctaaatcaatac 38661902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 31087260 - 31087310
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 72  Q
    |||||||||||||| ||||||||| | | |||||||||||||||| |||||    
T  31087260 atcgaacctgagacctcgaggagggggatactcccagatcccaagccaata 31087310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 2203560 - 2203515
Alignment:
Q  28 cctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||| | |||||||||||||||||||| ||||||| ||||||    
T  2203560 cctgagaccttgaggaggagcacactcccaggtcccaagccaatac 2203515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 4830558 - 4830518
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaa 65  Q
    ||||||||||| |||||||||| ||||||| ||||||||||    
T  4830558 gaacctgagacctcgaggaggaacacactctcagatcccaa 4830518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 6536591 - 6536543
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| | ||||||||||||||||| || ||||||| ||||||    
T  6536591 gaacctgagaccttgaggaggagcacactcctaggtcccaagccaatac 6536543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 6569791 - 6569823
Alignment:
Q  40 aggaggagcacactcccagatcccaagtcaata 72  Q
    ||||||||||||||||||||||||||| |||||    
T  6569791 aggaggagcacactcccagatcccaagccaata 6569823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 11819850 - 11819806
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| | |||||||||||||||||||  |||||||    
T  11819850 atcgaacctgagaccttgaggaggagcacactcccaagtcccaag 11819806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 11928733 - 11928769
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccag 58  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  11928733 atcgaacctgagacctcgaggaggagcacacttccag 11928769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 22193366 - 22193414
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaa 70  Q
    ||||||||| |||| | ||||||||||||||||||||  ||||||||||    
T  22193366 atcgaacctaagaccttgaggaggagcacactcccaggccccaagtcaa 22193414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 27750804 - 27750760
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaag 66  Q
    |||||||||||||| | |||||||||||||||||||  |||||||    
T  27750804 atcgaacctgagaccttgaggaggagcacactcccaagtcccaag 27750760  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 35583673 - 35583625
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaa 70  Q
    ||||| |||||||| ||||||||||||| |||||||  |||||||||||    
T  35583673 atcgatcctgagacctcgaggaggagcaaactcccaagtcccaagtcaa 35583625  T

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Target: scaffold0194 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 13048 - 13099
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||| | ||||||||||||||||||||||| |||| ||||||    
T  13048 atcgaacctgagaccttgaggaggagcacactcccagatctcaagccaatac 13099  T

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Target: scaffold0070 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 42522 - 42573
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||||  ||||||||||| |||||||||| ||||||||||||    
T  42522 atcgaacctgagactctgaggaggagcatactcccagattccaagtcaatac 42573  T

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Target: scaffold0291 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 2472 - 2512
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcc 62  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  2472 atcgaacctgagaccttgaggaggagcacactcccagatcc 2512  T

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Target: scaffold0211 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 24127 - 24076
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| ||||||| |||||||||||||| |  ||||||||||||||    
T  24127 atcgaacctgacacttcgaagaggagcacactcctaagtcccaagtcaatac 24076  T

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Target: scaffold0122 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 6921 - 6972
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    |||||||||||||||| ||||||||||||||||||   ||||||| ||||||    
T  6921 atcgaacctgagactttgaggaggagcacactccccagtcccaagccaatac 6972  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 93021 - 92970
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||| |||| || ||||||| ||||||||||||| ||||||||||||    
T  93021 atcgaacctcagacctcaaggaggatcacactcccagattccaagtcaatac 92970  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 19849 - 19900
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||| |||||| || |||||||||| |||||||||||||||| ||||||    
T  19849 atcgaacttgagacctcaaggaggagcagactcccagatcccaagccaatac 19900  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 41638 - 41686
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| ||||||||||||| |||| |||||| |||| ||||||    
T  41638 gaacctgagacctcgaggaggagcatactctcagatctcaagccaatac 41686  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 14974 - 15041
Alignment:
Q  22 atcgaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 89  Q
    |||||||||||||||| ||||||||||| |||||||| ||| ||| ||||| ||  |||||||||||||    
T  14974 atcgaacctgagactt-gaggaggagcatactcccagttcctaagccaatagcatcagactaacccaag 15041  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 157004 - 157040
Alignment:
Q  37 tcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  157004 tcgaggaggagcacactcccagatctcaagccaatac 157040  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 94976 - 95024
Alignment:
Q  25 gaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 73  Q
    ||||||||||| | |||||||||||||||||||| | ||||| ||||||    
T  94976 gaacctgagaccttgaggaggagcacactcccaggttccaagccaatac 95024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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