View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_35 (Length: 380)

Name: NF0669_low_35
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_35
NF0669_low_35
[»] chr2 (14 HSPs)
chr2 (36-191)||(6760790-6760946)
chr2 (229-380)||(6759761-6759913)
chr2 (25-72)||(28846714-28846761)
chr2 (25-72)||(39715015-39715062)
chr2 (21-72)||(34041590-34041641)
chr2 (25-64)||(25637182-25637221)
chr2 (25-72)||(41202273-41202320)
chr2 (25-72)||(42327401-42327448)
chr2 (25-71)||(6859318-6859364)
chr2 (39-92)||(12994396-12994450)
chr2 (29-71)||(42860372-42860414)
chr2 (321-362)||(26833820-26833861)
chr2 (25-92)||(21213771-21213839)
chr2 (21-65)||(26545870-26545914)
[»] chr5 (16 HSPs)
chr5 (21-72)||(14495807-14495858)
chr5 (25-72)||(16773830-16773877)
chr5 (28-72)||(1410668-1410712)
chr5 (24-64)||(29692391-29692431)
chr5 (21-72)||(87425-87476)
chr5 (28-65)||(22020871-22020908)
chr5 (36-72)||(29075804-29075840)
chr5 (25-64)||(4793094-4793133)
chr5 (25-71)||(9842852-9842898)
chr5 (31-65)||(41165641-41165675)
chr5 (29-65)||(84854-84890)
chr5 (36-72)||(15641809-15641845)
chr5 (21-73)||(17028266-17028318)
chr5 (33-65)||(17761369-17761401)
chr5 (29-88)||(30883208-30883268)
chr5 (25-88)||(43241688-43241752)
[»] chr3 (35 HSPs)
chr3 (27-72)||(4844519-4844564)
chr3 (27-72)||(4870215-4870260)
chr3 (21-70)||(31520607-31520656)
chr3 (25-65)||(44743861-44743901)
chr3 (25-72)||(2667885-2667932)
chr3 (25-72)||(4222164-4222211)
chr3 (21-72)||(46518651-46518702)
chr3 (25-72)||(51903884-51903931)
chr3 (25-71)||(13808891-13808937)
chr3 (21-71)||(27259185-27259235)
chr3 (21-71)||(31788972-31789022)
chr3 (25-70)||(8501579-8501624)
chr3 (25-70)||(10445145-10445190)
chr3 (20-72)||(9557343-9557395)
chr3 (21-88)||(17108900-17108968)
chr3 (25-65)||(30311336-30311376)
chr3 (21-65)||(31608526-31608570)
chr3 (25-88)||(36720387-36720451)
chr3 (21-88)||(49494148-49494216)
chr3 (25-72)||(14339633-14339680)
chr3 (25-72)||(29563923-29563970)
chr3 (25-72)||(47454623-47454670)
chr3 (25-71)||(37051300-37051346)
chr3 (25-67)||(39253725-39253767)
chr3 (24-65)||(7975448-7975489)
chr3 (31-72)||(28531070-28531111)
chr3 (28-73)||(47860778-47860823)
chr3 (25-62)||(52769989-52770026)
chr3 (31-71)||(11090177-11090217)
chr3 (20-72)||(11612322-11612374)
chr3 (25-92)||(12761514-12761582)
chr3 (25-65)||(15048067-15048107)
chr3 (28-72)||(21960574-21960618)
chr3 (25-65)||(28703410-28703450)
chr3 (21-65)||(44069788-44069832)
[»] chr4 (24 HSPs)
chr4 (25-88)||(43623450-43623514)
chr4 (25-65)||(39509100-39509140)
chr4 (25-72)||(24827848-24827895)
chr4 (25-72)||(38869791-38869838)
chr4 (25-72)||(43728418-43728465)
chr4 (25-72)||(47044740-47044787)
chr4 (25-72)||(51948503-51948550)
chr4 (21-70)||(51954139-51954188)
chr4 (25-88)||(7292804-7292868)
chr4 (29-88)||(21660154-21660214)
chr4 (29-88)||(21668918-21668978)
chr4 (29-72)||(13015450-13015493)
chr4 (25-68)||(28635723-28635766)
chr4 (25-64)||(30938225-30938264)
chr4 (25-72)||(37109357-37109404)
chr4 (25-60)||(41346969-41347004)
chr4 (25-72)||(42644916-42644963)
chr4 (21-64)||(53496908-53496951)
chr4 (25-71)||(23377980-23378026)
chr4 (25-63)||(40813324-40813362)
chr4 (25-70)||(2622401-2622446)
chr4 (42-71)||(12821992-12822021)
chr4 (31-72)||(25869589-25869630)
chr4 (21-65)||(4249207-4249251)
[»] scaffold1367 (1 HSPs)
scaffold1367 (25-72)||(846-893)
[»] scaffold0299 (1 HSPs)
scaffold0299 (25-72)||(11551-11598)
[»] chr6 (14 HSPs)
chr6 (22-72)||(31622994-31623044)
chr6 (36-72)||(24641207-24641243)
chr6 (25-88)||(33549110-33549174)
chr6 (21-72)||(6776609-6776660)
chr6 (29-72)||(34786464-34786507)
chr6 (25-98)||(30127396-30127470)
chr6 (21-86)||(13661529-13661594)
chr6 (36-72)||(9433607-9433643)
chr6 (25-92)||(11423568-11423636)
chr6 (25-72)||(12234513-12234560)
chr6 (29-60)||(13227168-13227199)
chr6 (25-66)||(23910117-23910158)
chr6 (25-65)||(20213071-20213111)
chr6 (25-65)||(22107094-22107134)
[»] chr1 (27 HSPs)
chr1 (21-71)||(9964462-9964512)
chr1 (25-71)||(12587294-12587340)
chr1 (25-88)||(15786326-15786390)
chr1 (21-88)||(25297778-25297846)
chr1 (25-72)||(9165201-9165248)
chr1 (21-68)||(17439944-17439991)
chr1 (29-71)||(12259284-12259326)
chr1 (29-73)||(2069678-2069721)
chr1 (21-65)||(12370193-12370237)
chr1 (24-72)||(47720853-47720901)
chr1 (24-72)||(47727845-47727893)
chr1 (24-72)||(47753737-47753785)
chr1 (25-72)||(7219924-7219971)
chr1 (25-72)||(8177188-8177235)
chr1 (25-72)||(33700779-33700826)
chr1 (21-72)||(36124856-36124907)
chr1 (21-72)||(44126418-44126469)
chr1 (25-72)||(51703802-51703849)
chr1 (25-72)||(51814517-51814564)
chr1 (38-72)||(44046167-44046201)
chr1 (39-72)||(52336794-52336827)
chr1 (25-65)||(952541-952581)
chr1 (29-73)||(2074024-2074067)
chr1 (25-65)||(2799892-2799932)
chr1 (25-65)||(9117149-9117189)
chr1 (25-88)||(16169984-16170048)
chr1 (28-64)||(41508862-41508898)
[»] scaffold0258 (1 HSPs)
scaffold0258 (25-88)||(15329-15393)
[»] chr7 (23 HSPs)
chr7 (25-88)||(22760869-22760933)
chr7 (25-72)||(48771961-48772008)
chr7 (25-71)||(26703149-26703195)
chr7 (28-65)||(9871295-9871332)
chr7 (27-72)||(21854571-21854616)
chr7 (25-65)||(45709714-45709754)
chr7 (25-72)||(7801203-7801250)
chr7 (25-72)||(8108604-8108651)
chr7 (25-72)||(20335837-20335884)
chr7 (21-72)||(23301604-23301655)
chr7 (29-72)||(25021345-25021388)
chr7 (25-72)||(25590634-25590681)
chr7 (25-72)||(26459416-26459463)
chr7 (25-72)||(41519270-41519317)
chr7 (25-67)||(3174955-3174997)
chr7 (25-59)||(9183197-9183231)
chr7 (29-71)||(23552142-23552184)
chr7 (25-70)||(17041018-17041063)
chr7 (29-62)||(21410720-21410753)
chr7 (21-65)||(18363726-18363770)
chr7 (25-53)||(27776214-27776242)
chr7 (25-88)||(43215190-43215254)
chr7 (21-65)||(44628185-44628229)
[»] chr8 (12 HSPs)
chr8 (25-72)||(968385-968432)
chr8 (25-72)||(16852363-16852410)
chr8 (25-72)||(23361655-23361702)
chr8 (25-72)||(29858055-29858102)
chr8 (25-72)||(30483890-30483937)
chr8 (27-72)||(20994465-20994511)
chr8 (25-71)||(34628666-34628712)
chr8 (27-72)||(2203515-2203560)
chr8 (21-70)||(44780116-44780165)
chr8 (39-71)||(6569791-6569823)
chr8 (36-72)||(7140732-7140768)
chr8 (25-65)||(35641907-35641947)
[»] scaffold0194 (1 HSPs)
scaffold0194 (25-72)||(13052-13099)
[»] scaffold0070 (1 HSPs)
scaffold0070 (25-72)||(42526-42573)
[»] scaffold0291 (1 HSPs)
scaffold0291 (25-61)||(2476-2512)
[»] scaffold0021 (1 HSPs)
scaffold0021 (36-72)||(157004-157040)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 6760946 - 6760790
Alignment:
Q  36 tcgaggaggagcacactcccagatcccaagtcaatac-acaagactaacccaagcgggctaaatatatacgtcacacatttacattcaatttaaatatat 134  Q
    |||| |||||||| |||||||||||||||  |||||| || |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  6760946 tcgatgaggagcatactcccagatcccaaaccaatactaccagaccaacccaagtgggctaaatatatacgtcacatatttacattcaatttaaatatat 6760847  T
Q  135 acgtcatcaattatattatatggtatacaagtcagacaaatcttccttccatcacat 191  Q
    ||| ||||||||||||||||||||| |||||||| |||| |||||||||||||||||    
T  6760846 acgccatcaattatattatatggtacacaagtcaaacaagtcttccttccatcacat 6760790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 229 - 380
Target Start/End: Complemental strand, 6759913 - 6759761
Alignment:
Q  229 ttagtttttattattagattaataaatttcacaattttatcaaatgagatacaatgtaa-ttattgagtcaatagtnnnnnnnttatttgtacataatac 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||||||    
T  6759913 ttagtttttattattagattaataaatttcacaattttatcaaatgagatacaatgtaatttattgagtcaatagtaaaaaaaacatttgtacataatac 6759814  T
Q  328 aatatcattttatttgtatatgttagacaaagtctttgcaatttttcacaagt 380  Q
    ||||||||||||||| ||||||||||||||||||| | || ||||||||||||    
T  6759813 aatatcattttatttatatatgttagacaaagtctgtacattttttcacaagt 6759761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 28846761 - 28846714
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  28846761 aacctgagacatcgaggaggagcacactcccaggtcccaagtcaatac 28846714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 39715062 - 39715015
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  39715062 aacctgagacctcgaggaggagcacactcccaggtcccaagtcaatac 39715015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 34041590 - 34041641
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||||| | |||||||||||||||| ||||||| ||||||||||    
T  34041590 atcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaatac 34041641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 25637221 - 25637182
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaa 64  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  25637221 aacctgagacctcgagaaggagcacactcccagatcccaa 25637182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 41202320 - 41202273
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||| |||||||||||||||||| ||||||||||| || ||||||||    
T  41202320 aacctaagacttcgaggaggagcatactcccagatctcaggtcaatac 41202273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 42327401 - 42327448
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | |||||||||||||||||||| ||||||| ||||||    
T  42327401 aacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 42327448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 6859318 - 6859364
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||||||||||| || |||||||||||||||| ||| ||||||||||    
T  6859318 aacctgagactttgaagaggagcacactcccatatcacaagtcaata 6859364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 12994396 - 12994450
Alignment:
Q  39 aggaggagcacactcccagatcccaagtcaata-cacaagactaacccaagcggg 92  Q
    ||||||||||||||||||| ||||||||||||| ||| |||| ||| ||||||||    
T  12994396 aggaggagcacactcccaggtcccaagtcaataccactagaccaactcaagcggg 12994450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 42860414 - 42860372
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||||| |||||||||||||||||||||| || ||||||||||    
T  42860414 tgagacctcgaggaggagcacactcccaggtctcaagtcaata 42860372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 26833861 - 26833820
Alignment:
Q  321 ataatacaatatcattttatttgtatatgttagacaaagtct 362  Q
    ||||||||| | ||||||||||||||||||||||| ||||||    
T  26833861 ataatacaaaaccattttatttgtatatgttagactaagtct 26833820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 21213839 - 21213771
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaagcggg 92  Q
    |||||||||| || ||||||| ||||||||||| ||||||| ||||| ||| |||| |||||| |||||    
T  21213839 aacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaacccatgcggg 21213771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 26545914 - 26545870
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    ||||||| |||||| ||||| ||||||||||| ||||||||||||    
T  26545914 atcaaacttgagacctcgagaaggagcacacttccagatcccaag 26545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 14495807 - 14495858
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  14495807 atcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaatac 14495858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 16773877 - 16773830
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  16773877 aacctgagacctcgaggaggagcacactcccaggtcccaagtcaatac 16773830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 1410668 - 1410712
Alignment:
Q  28 ctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||    
T  1410668 ctgagacctcgaggaggagcacactcccatatcccaagtcaatac 1410712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 29692391 - 29692431
Alignment:
Q  24 aaacctgagacttcgaggaggagcacactcccagatcccaa 64  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  29692391 aaacctgagactttgaggaggagcacactcccagatcccaa 29692431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 87425 - 87476
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||||| | |||||||||||||||||||||| ||||| ||||||    
T  87425 atcaaacctgagaccttgaggaggagcacactcccagattccaaggcaatac 87476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 22020871 - 22020908
Alignment:
Q  28 ctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| |||||||||||||||||||||||||||    
T  22020871 ctgagacttcaaggaggagcacactcccagatcccaag 22020908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 29075840 - 29075804
Alignment:
Q  36 tcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||||||||||||||||||||| ||||||    
T  29075840 tcgaggaggagcacactcccagatcccaagccaatac 29075804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 4793094 - 4793133
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaa 64  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  4793094 aacctgagacctcgaggaggagcacactcccaggtcccaa 4793133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 9842852 - 9842898
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||| ||||| |||||||||||||||||||||  |||||||||||||    
T  9842852 aacccgagacctcgaggaggagcacactcccaagtcccaagtcaata 9842898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 41165641 - 41165675
Alignment:
Q  31 agacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| ||||||||||||||||||||||||    
T  41165641 agacttcgagaaggagcacactcccagatcccaag 41165675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 84890 - 84854
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||| | ||||||||||||||||||||||||||||    
T  84890 tgagaccttgaggaggagcacactcccagatcccaag 84854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 15641809 - 15641845
Alignment:
Q  36 tcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  15641809 tcgaggacgagcacactcccaggtcccaagtcaatac 15641845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 17028266 - 17028318
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaataca 73  Q
    |||||||||||||| | |||||||||||||||||||  ||||||  |||||||    
T  17028266 atcaaacctgagaccttgaggaggagcacactcccaagtcccaacccaataca 17028318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 17761369 - 17761401
Alignment:
Q  33 acttcgaggaggagcacactcccagatcccaag 65  Q
    ||||| |||||||||||||||||||||||||||    
T  17761369 acttcaaggaggagcacactcccagatcccaag 17761401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 30883208 - 30883268
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||| | |||||||||||||||||||| ||||||| ||||| ||| |||| ||||||||    
T  30883208 tgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaag 30883268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 43241688 - 43241752
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||||||| || |||| | ||||||||| |||||||||||||||| ||| |||| ||||||||    
T  43241688 aacctgagacctcaaggaagggcacactccaagatcccaagtcaataccactagaccaacccaag 43241752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 4844519 - 4844564
Alignment:
Q  27 cctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  4844519 cctgagacctcgaggaggagcacactcccagatcccaagtcaatac 4844564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 4870215 - 4870260
Alignment:
Q  27 cctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  4870215 cctgagacctcgaggaggagcacactcccagatcccaagtcaatac 4870260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 31520607 - 31520656
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 70  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| ||||    
T  31520607 atcaaacctaagacctcgaggaggagcacactcccagatcccaagccaat 31520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 44743861 - 44743901
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  44743861 aacctgagacctcgaggaggagcacactcccagatcccaag 44743901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 2667932 - 2667885
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  2667932 aacctgagacctcgaggaagagcacactcccagatcccaagccaatac 2667885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 4222211 - 4222164
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  4222211 aacctaagactttgaggaggagcacactcccagatcccaagccaatac 4222164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 46518702 - 46518651
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||| || | |||||||||||||||||||||||||||| ||||||    
T  46518702 atcaaacctgaaaccttgaggaggagcacactcccagatcccaagccaatac 46518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 51903884 - 51903931
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  51903884 aacctgagaccacgaggaggagcacactcccagatcccaagccaatac 51903931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 13808891 - 13808937
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||||||||| | ||||||||||||||| ||||||||||||||||||    
T  13808891 aacctgagacctagaggaggagcacactgccagatcccaagtcaata 13808937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 27259235 - 27259185
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    ||||||||||| || |||||||||||||||||||||| ||||||| |||||    
T  27259235 atcaaacctgaaacctcgaggaggagcacactcccaggtcccaagccaata 27259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 31788972 - 31789022
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    ||||||||| | || |||||||||||||||||||||||||||||| |||||    
T  31788972 atcaaacctaaaacctcgaggaggagcacactcccagatcccaagccaata 31789022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 8501579 - 8501624
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaat 70  Q
    ||||||| |||| ||||||||||||||||||||||| |||||||||    
T  8501579 aacctgaaactttgaggaggagcacactcccagatctcaagtcaat 8501624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 10445145 - 10445190
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaat 70  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||    
T  10445145 aacctgagacctcgaggaggagcacactcccaggtcccaagccaat 10445190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 9557395 - 9557343
Alignment:
Q  20 catcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||| |||||||||  |||||||||||||||||| ||||||||||| ||||||    
T  9557395 catcgaacctgagatctcgaggaggagcacactctcagatcccaagccaatac 9557343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 17108900 - 17108968
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||||||||||| | ||||||||||||||||||| ||| | |||||||| ||| | |||||||||||    
T  17108900 atcaaacctgagaccttgaggaggagcacactcccacatctccagtcaataccaccaaactaacccaag 17108968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 30311376 - 30311336
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  30311376 aacctgagaccttgaggaggagcacactcccagatcccaag 30311336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 31608526 - 31608570
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||    
T  31608526 atcaaatctgagacctcgaggaggagcacactcccagatctcaag 31608570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 36720451 - 36720387
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    ||||||| || ||||||||||||||||||||| |||||||| ||||| ||| |||| ||||||||    
T  36720451 aacctgaaacctcgaggaggagcacactcccatatcccaagccaataccaccagaccaacccaag 36720387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 49494148 - 49494216
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||||||||||| ||||||| ||||||||||||| ||  |||||||||| ||| || ||||||||||    
T  49494148 atcaaacctgagacctcgaggaagagcacactcccaaatttcaagtcaataccactaggctaacccaag 49494216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 14339680 - 14339633
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | ||||||||||||||||||| |||||||| ||||||    
T  14339680 aacctgagacattgaggaggagcacactcccaaatcccaagccaatac 14339633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 29563970 - 29563923
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||||||||||| |||||||| ||||||| |||| ||||||    
T  29563970 aacctgagacttcgaggagaagcacacttccagatctcaagccaatac 29563923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 47454623 - 47454670
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| ||||||||||||||||||| ||||| |||| ||||||    
T  47454623 aacctgagacctcgaggaggagcacactccaagatctcaagccaatac 47454670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 37051300 - 37051346
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    ||||||||||||  ||||||| |||||||||||||||||| ||||||    
T  37051300 aacctgagactttaaggaggaacacactcccagatcccaaatcaata 37051346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 39253767 - 39253725
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtc 67  Q
    |||||||||| | || |||||||||||||||||||||||||||    
T  39253767 aacctgagaccttgaagaggagcacactcccagatcccaagtc 39253725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 7975489 - 7975448
Alignment:
Q  24 aaacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||| |||| | ||||||||||||||||||||||||||||    
T  7975489 aaacctaagaccttgaggaggagcacactcccagatcccaag 7975448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 28531070 - 28531111
Alignment:
Q  31 agacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  28531070 agacctcgaggaggagcatactcccagatcccaagccaatac 28531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 47860823 - 47860778
Alignment:
Q  28 ctgagacttcgaggaggagcacactcccagatcccaagtcaataca 73  Q
    ||||||||| ||||||||||||||||| |||||| ||| |||||||    
T  47860823 ctgagactttgaggaggagcacactcctagatccaaagccaataca 47860778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 52769989 - 52770026
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatccc 62  Q
    |||||||||| || ||||||||||||||||||||||||    
T  52769989 aacctgagacctcaaggaggagcacactcccagatccc 52770026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 11090177 - 11090217
Alignment:
Q  31 agacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||| ||||||||||||||| |||||||||||||| |||||    
T  11090177 agacctcgaggaggagcacattcccagatcccaagccaata 11090217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 11612374 - 11612322
Alignment:
Q  20 catcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||| |||||||||| |  ||||||||||||||||||| |||||||| |||||    
T  11612374 catcgaacctgagaccttaaggaggagcacactcccagctcccaagtgaatac 11612322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 12761582 - 12761514
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaagcggg 92  Q
    |||||||||  || ||||||| ||||||||||| ||||||||||||| ||| |||| |||||| |||||    
T  12761582 aacctgagagctcaaggaggaacacactcccaggtcccaagtcaataccaccagaccaacccatgcggg 12761514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 15048067 - 15048107
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| | ||||||||||||| ||||||||||||||    
T  15048067 aacctgagaccttgaggaggagcacattcccagatcccaag 15048107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 21960618 - 21960574
Alignment:
Q  28 ctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||| |||||||||||||||||| ||| ||||||| ||||||    
T  21960618 ctgagacctcgaggaggagcacactctcaggtcccaagccaatac 21960574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 28703410 - 28703450
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| | || |||||||||||||||||||||||||    
T  28703410 aacctgagaccttgaagaggagcacactcccagatcccaag 28703450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 44069832 - 44069788
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||||    
T  44069832 atcaaacctgagaccttgaggaggagcacactccaagatctcaag 44069788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 43623450 - 43623514
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||| ||| |||||||||||||    
T  43623450 aacctgagacttcaaggaggagcacactccctgatctcaagtcaatatcactagactaacccaag 43623514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 39509140 - 39509100
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  39509140 aacctgagacctcgaggaggagcacactcccagatcccaag 39509100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 24827895 - 24827848
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  24827895 aacctgagacctcgaggaggagcgcactcccaggtcccaagtcaatac 24827848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 38869838 - 38869791
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | |||||||||||||||||||||||||||| ||||||    
T  38869838 aacctgagaccttgaggaggagcacactcccagatcccaagccaatac 38869791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 43728465 - 43728418
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||    
T  43728465 aacctgagactttgaggaggagcacactcccagatcataagtcaatac 43728418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 47044787 - 47044740
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||||    
T  47044787 aacctgagacctcgaggaggagcaaactctcagatcccaagtcaatac 47044740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 51948550 - 51948503
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  51948550 aacctgagacctcgaggaggggcacactcctagatcccaagtcaatac 51948503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 51954188 - 51954139
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 70  Q
    |||||||||||||| ||||||||||||| |||||||  ||||||||||||    
T  51954188 atcaaacctgagacctcgaggaggagcatactcccaagtcccaagtcaat 51954139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 7292804 - 7292868
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||||||||| |||||||||||||||||||| | ||||| ||||| ||| |||| ||||||||    
T  7292804 aacctgagactttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaag 7292868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 21660154 - 21660214
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||| ||||||| ||||||||||||||||| |||||||||| ||| |||| ||||||||    
T  21660154 tgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaag 21660214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 21668918 - 21668978
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||| ||||||| ||||||||||||||||| |||||||||| ||| |||| ||||||||    
T  21668918 tgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaag 21668978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 13015493 - 13015450
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||    
T  13015493 tgagacttcgaggaggagcacactcccaagtcccaagccaatac 13015450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 28635766 - 28635723
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtca 68  Q
    ||||| |||| || ||||||||||||||||||||||||||||||    
T  28635766 aacctaagacctccaggaggagcacactcccagatcccaagtca 28635723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 30938225 - 30938264
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaa 64  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  30938225 aacctgagacctcgaggaggagcacactccaagatcccaa 30938264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 37109357 - 37109404
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | |||||||||||||||||||| ||||||| ||||||    
T  37109357 aacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 37109404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 41346969 - 41347004
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatc 60  Q
    |||||||||||||||||||||||| |||||||||||    
T  41346969 aacctgagacttcgaggaggagcatactcccagatc 41347004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 42644916 - 42644963
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||| ||||| || ||||||| ||||||||||||||||||    
T  42644916 aacctgagactttgaggaagaacacactctcagatcccaagtcaatac 42644963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 53496951 - 53496908
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaa 64  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||    
T  53496951 atcaaatctgagactttgaggaggagcacactcccaggtcccaa 53496908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 23378026 - 23377980
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||||||||| | |||||||||||||||||||| ||||||| |||||    
T  23378026 aacctgagaccttgaggaggagcacactcccaggtcccaagccaata 23377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 40813324 - 40813362
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatccca 63  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  40813324 aacctgagacttcgaaaaggagcacactcccagatccca 40813362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 2622401 - 2622446
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaat 70  Q
    |||||||||| | |||||||||||||||||||| ||||||| ||||    
T  2622401 aacctgagacatggaggaggagcacactcccaggtcccaagccaat 2622446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 12822021 - 12821992
Alignment:
Q  42 aggagcacactcccagatcccaagtcaata 71  Q
    ||||||||||||||||||||||||||||||    
T  12822021 aggagcacactcccagatcccaagtcaata 12821992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 25869589 - 25869630
Alignment:
Q  31 agacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||| |||||||||||||||| |||||| |||||||||||    
T  25869589 agactttgaggaggagcacactctcagatctcaagtcaatac 25869630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 4249251 - 4249207
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||||||| | ||||||||||||||||| | ||||||||    
T  4249251 atcaaacctgagaccttgaggaggagcacactccaaaatcccaag 4249207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 846 - 893
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  846 aacctgagacttcgaggaggagcacattcccagatcccaagccaatac 893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 11598 - 11551
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  11598 aacctgagacctcgaggaggagcacactcccagatcccaagccaatac 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 31622994 - 31623044
Alignment:
Q  22 tcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| ||||||    
T  31622994 tcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 31623044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 24641207 - 24641243
Alignment:
Q  36 tcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  24641207 tcgaggaggagcacactcccagatcccaagtcaatac 24641243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 33549174 - 33549110
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||| ||| |||| ||||||||    
T  33549174 aacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaag 33549110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 6776609 - 6776660
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||| |||||| |||||||||||||||| ||||||||||||| ||||||    
T  6776609 atcaaacttgagacatcgaggaggagcacacccccagatcccaagccaatac 6776660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 34786464 - 34786507
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  34786464 tgagacttcgagaaggagcacactcccagatcccaagccaatac 34786507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 30127470 - 30127396
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaagcgggctaaat 98  Q
    |||||||||| |||| |||||||||||||||||| |||||| ||||| ||| |||| |||||||| ||| |||||    
T  30127470 aacctgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggttaaat 30127396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 13661594 - 13661529
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatacacaagactaaccca 86  Q
    |||||||||||||| |||||||||||||||||||||  |  |||| |||||||| |||| ||||||    
T  13661594 atcaaacctgagacctcgaggaggagcacactcccaagtgtcaagccaatacactagaccaaccca 13661529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 9433607 - 9433643
Alignment:
Q  36 tcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9433607 tcgaggaagagcacactcccagatcccaagtcaatac 9433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 11423636 - 11423568
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaagcggg 92  Q
    |||||||||| |||||||| |||| ||||||| |||||||||||||| ||| |||| | ||||||||||    
T  11423636 aacctgagacctcgaggagaagcatactcccaaatcccaagtcaataccaccagaccagcccaagcggg 11423568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 12234513 - 12234560
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||||  ||||||||||||||| ||||||||||||||    
T  12234513 aacctgagacctcgagagggagcacactcccaggtcccaagtcaatac 12234560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 13227168 - 13227199
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatc 60  Q
    ||||||||||||||||||||||||||||||||    
T  13227168 tgagacttcgaggaggagcacactcccagatc 13227199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 23910117 - 23910158
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagt 66  Q
    |||||||||| | |||||||||||||||||||| ||||||||    
T  23910117 aacctgagaccttgaggaggagcacactcccaggtcccaagt 23910158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 20213111 - 20213071
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| | |||||||||||||||||||| |||||||    
T  20213111 aacctgagacattgaggaggagcacactcccaggtcccaag 20213071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 22107134 - 22107094
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| | |||||||||||||||||||| |||||||    
T  22107134 aacctgagacattgaggaggagcacactcccaggtcccaag 22107094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 9964512 - 9964462
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||||||||||||| | ||||| ||||||||||||||||||||||||||||    
T  9964512 atcaaacctgagacattgaggaagagcacactcccagatcccaagtcaata 9964462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 12587340 - 12587294
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||    
T  12587340 aacctgagacctcgaggaggagcacactcacagatcccaagtcaata 12587294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 15786326 - 15786390
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac-acaagactaacccaag 88  Q
    |||||||||| | |||||||||||||||||||||||||||| |||||| || |||| ||||||||    
T  15786326 aacctgagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaacccaag 15786390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 25297846 - 25297778
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    ||||||||| |||| |||||||||||||||||| ||||||| ||||||||| ||| |||| ||||||||    
T  25297846 atcaaacctcagacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacccaag 25297778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 9165201 - 9165248
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  9165201 aacctgagactttgaggaggagcacactcccaggtcccaagccaatac 9165248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 17439991 - 17439944
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtca 68  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  17439991 atcaaacatgagacctcgaggaggagcacactcccagatcctaagtca 17439944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 12259326 - 12259284
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  12259326 tgagacttcgaggaggagcacactcccaaatcccaagttaata 12259284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 2069721 - 2069678
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaataca 73  Q
    |||||||||||||||||||||| | ||||||||||||||||||||    
T  2069721 tgagacttcgaggaggagcaca-tgccagatcccaagtcaataca 2069678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 12370237 - 12370193
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||    
T  12370237 atcaaacatgagacctcgaggaggagcacactcccaggtcccaag 12370193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 47720901 - 47720853
Alignment:
Q  24 aaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||||| ||||||||||||||||| | ||| |||||||||||    
T  47720901 aaacctgagactttgaggaggagcacactcctatatctcaagtcaatac 47720853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 47727893 - 47727845
Alignment:
Q  24 aaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||||| ||||||||||||||||| | ||| |||||||||||    
T  47727893 aaacctgagactttgaggaggagcacactcctatatctcaagtcaatac 47727845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 47753785 - 47753737
Alignment:
Q  24 aaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||| | ||||||||||||| ||| |||||||||||||||||    
T  47753785 aaacctgagaccttgaggaggagcacagtcctagatcccaagtcaatac 47753737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 7219924 - 7219971
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||||||||||||||||||||| ||  ||||| ||||||||    
T  7219924 aacctgagacttcgaggaggagcacactctcatgtcccaggtcaatac 7219971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 8177188 - 8177235
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||| || | |||||||||||||||||||||||||||| ||||||    
T  8177188 aacctgaaaccttgaggaggagcacactcccagatcccaagccaatac 8177235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 33700779 - 33700826
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | |||||||||||||||||||||| ||||| ||||||    
T  33700779 aacctgagaccttgaggaggagcacactcccagattccaagccaatac 33700826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 36124907 - 36124856
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||| |||||| || ||||||||||||||| ||| ||||||||||||||    
T  36124907 atcaaacttgagacctcaaggaggagcacactctcaggtcccaagtcaatac 36124856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 44126469 - 44126418
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||| ||||||| ||| |||||||||||||||||| ||||| ||||||||    
T  44126469 atcaaatctgagacctcgtggaggagcacactcccaggtcccaggtcaatac 44126418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 51703849 - 51703802
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||| |||| |||||||||||||||||||||| ||||| ||||||    
T  51703849 aacctgaaactttgaggaggagcacactcccagattccaagccaatac 51703802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 51814564 - 51814517
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | |||||||||||||||| |||||| |||||||||||    
T  51814564 aacctgagaccttgaggaggagcacactctcagatctcaagtcaatac 51814517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 44046167 - 44046201
Alignment:
Q  38 gaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||||||||||||||||||| ||||||    
T  44046167 gaggaggagcacactcccagatcccaagccaatac 44046201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 52336794 - 52336827
Alignment:
Q  39 aggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||||||||||||||||||| ||||||    
T  52336794 aggaggagcacactcccagatcccaagccaatac 52336827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 952581 - 952541
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||||| ||||| |||||||||||||| |||||||    
T  952581 aacctgagactttgaggatgagcacactcccaggtcccaag 952541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 2074067 - 2074024
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaataca 73  Q
    |||||||||||||||||||||||  | ||||||||||||||||||    
T  2074067 tgagacttcgaggaggagcacac-gctagatcccaagtcaataca 2074024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 2799932 - 2799892
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| | ||||||||||||||||||||||| ||||    
T  2799932 aacctgagaccttgaggaggagcacactcccagatctcaag 2799892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 9117189 - 9117149
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| || |||||||||||||| ||||||||||||    
T  9117189 aacctgagacctcaaggaggagcacacttccagatcccaag 9117149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 16169984 - 16170048
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    ||||||| || | |||||||| ||||||||||| ||||||||||||| ||| || ||||||||||    
T  16169984 aacctgaaaccttgaggaggaacacactcccaggtcccaagtcaataccaccaggctaacccaag 16170048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 41508898 - 41508862
Alignment:
Q  28 ctgagacttcgaggaggagcacactcccagatcccaa 64  Q
    ||||||| | |||||||||||||||||||||||||||    
T  41508898 ctgagaccttgaggaggagcacactcccagatcccaa 41508862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 15329 - 15393
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||| ||| |||| ||||||||    
T  15329 aacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaag 15393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 22760933 - 22760869
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||| ||| |||| ||||||||    
T  22760933 aacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaag 22760869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 48772008 - 48771961
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| || ||||||||||||||||||||||||||| ||||||    
T  48772008 aacctgagacctcaaggaggagcacactcccagatcccaagccaatac 48771961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 26703195 - 26703149
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||||||||| ||||| |||||||||||||||||||||||| |||||    
T  26703195 aacctgagacctcgagaaggagcacactcccagatcccaagccaata 26703149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 9871295 - 9871332
Alignment:
Q  28 ctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  9871295 ctgagacttcgaggaggagcacactcccaaatcccaag 9871332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 21854616 - 21854571
Alignment:
Q  27 cctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| ||||||||||||||||||||||||| || ||||||    
T  21854616 cctgagactttgaggaggagcacactcccagatccctagccaatac 21854571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 45709714 - 45709754
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  45709714 aacctgagacctcgaggaggagcacactctcagatcccaag 45709754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 7801250 - 7801203
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | || ||||||||||||||||| ||||||||||||||    
T  7801250 aacctgagaccttgaagaggagcacactcccaggtcccaagtcaatac 7801203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 8108651 - 8108604
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| || ||||||||| |||||||| |||||||||||||||    
T  8108651 aacctgagacctcaaggaggagcgcactcccatatcccaagtcaatac 8108604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 20335837 - 20335884
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||||||||||||||||||||  ||||||| ||||||    
T  20335837 aacctgagacctcgaggaggagcacactcccaagtcccaagccaatac 20335884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 23301604 - 23301655
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||| |||||| || ||||||||||||||||||  ||||||||||||||    
T  23301604 atcaaacttgagacctcaaggaggagcacactcccaagtcccaagtcaatac 23301655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 25021345 - 25021388
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||    
T  25021345 tgagactttgaggaggagcacactcccaggtcccaagccaatac 25021388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 25590681 - 25590634
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||| ||||| ||||||||||||||||||||||||| |||| ||||||    
T  25590681 aacccgagacctcgaggaggagcacactcccagatctcaagccaatac 25590634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 26459416 - 26459463
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | |||||||||||||||||||| ||||||| ||||||    
T  26459416 aacctgagaccttgaggaggagcacactcccaggtcccaagccaatac 26459463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 41519270 - 41519317
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | ||||||||||||||||| | |||||||||||||||    
T  41519270 aacctgagaccttgaggaggagcacactcctaaatcccaagtcaatac 41519317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 3174997 - 3174955
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtc 67  Q
    |||||||||| |||||  |||||||||||||||||||||||||    
T  3174997 aacctgagacctcgagatggagcacactcccagatcccaagtc 3174955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 9183197 - 9183231
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagat 59  Q
    |||||||||||| ||||||||||||||||||||||    
T  9183197 aacctgagactttgaggaggagcacactcccagat 9183231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 23552184 - 23552142
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||||| | |||||||||||||||||||| |||||||||||||    
T  23552184 tgagaccttgaggaggagcacactcccaggtcccaagtcaata 23552142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 17041018 - 17041063
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaat 70  Q
    |||||||||| | ||||||||||||||| |||||||||||| ||||    
T  17041018 aacctgagaccttgaggaggagcacacttccagatcccaagccaat 17041063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 21410720 - 21410753
Alignment:
Q  29 tgagacttcgaggaggagcacactcccagatccc 62  Q
    ||||||||||||||||||||||||| ||||||||    
T  21410720 tgagacttcgaggaggagcacactctcagatccc 21410753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 18363770 - 18363726
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||||||| | ||||||||||||||||||| ||| ||||    
T  18363770 atcaaacctgagaccttgaggaggagcacactcccaaatctcaag 18363726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 27776242 - 27776214
Alignment:
Q  25 aacctgagacttcgaggaggagcacactc 53  Q
    |||||||||||||||||||||||||||||    
T  27776242 aacctgagacttcgaggaggagcacactc 27776214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 43215254 - 43215190
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata-cacaagactaacccaag 88  Q
    |||||||||| | ||||||||||||||||| || ||||||| ||||| ||| |||| ||||||||    
T  43215254 aacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaag 43215190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 44628185 - 44628229
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    ||||||| |||||||| ||||||||||||||||| || |||||||    
T  44628185 atcaaacttgagactttgaggaggagcacactccaaggtcccaag 44628229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 968432 - 968385
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||    
T  968432 aacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 968385  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 16852410 - 16852363
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||    
T  16852410 aacctgagacctcgaggaggagcacactcccaggtcccaagccaatac 16852363  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 23361655 - 23361702
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | ||||||||||||||||||| |||||||||||||||    
T  23361655 aacctgagaccttgaggaggagcacactcccatatcccaagtcaatac 23361702  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 29858055 - 29858102
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||||||||||||||||||| | ||||||| ||||||    
T  29858055 aacctgagacctcgaggaggagcacactccctggtcccaagccaatac 29858102  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 30483890 - 30483937
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||||    
T  30483890 aacctgagactctgaggaggagcacactcccatatcccaagccaatac 30483937  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 20994465 - 20994511
Alignment:
Q  27 cctgagacttcgagg-aggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| |||| |||||||||||||||| ||||||||||||||    
T  20994465 cctgagactttgagggaggagcacactcccaggtcccaagtcaatac 20994511  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 34628712 - 34628666
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaata 71  Q
    |||||||||||| |||||| | ||||||||||||||||||| |||||    
T  34628712 aacctgagactttgaggagaaacacactcccagatcccaagccaata 34628666  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 2203560 - 2203515
Alignment:
Q  27 cctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||| | |||||||||||||||||||| ||||||| ||||||    
T  2203560 cctgagaccttgaggaggagcacactcccaggtcccaagccaatac 2203515  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 44780116 - 44780165
Alignment:
Q  21 atcaaacctgagacttcgaggaggagcacactcccagatcccaagtcaat 70  Q
    |||||||||||||| | |||||||||||||||||||  ||||||| ||||    
T  44780116 atcaaacctgagaccttgaggaggagcacactcccaagtcccaagccaat 44780165  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 6569791 - 6569823
Alignment:
Q  39 aggaggagcacactcccagatcccaagtcaata 71  Q
    ||||||||||||||||||||||||||| |||||    
T  6569791 aggaggagcacactcccagatcccaagccaata 6569823  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 7140768 - 7140732
Alignment:
Q  36 tcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  7140768 tcgaggaggagcacacacccagatcccaagccaatac 7140732  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 35641907 - 35641947
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaag 65  Q
    |||||||||| ||||||||||||||||||||| ||| ||||    
T  35641907 aacctgagacatcgaggaggagcacactcccaaatctcaag 35641947  T

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Target: scaffold0194 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 13052 - 13099
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||| | ||||||||||||||||||||||| |||| ||||||    
T  13052 aacctgagaccttgaggaggagcacactcccagatctcaagccaatac 13099  T

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Target: scaffold0070 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 42526 - 42573
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    |||||||||||  ||||||||||| |||||||||| ||||||||||||    
T  42526 aacctgagactctgaggaggagcatactcccagattccaagtcaatac 42573  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 2476 - 2512
Alignment:
Q  25 aacctgagacttcgaggaggagcacactcccagatcc 61  Q
    |||||||||| | ||||||||||||||||||||||||    
T  2476 aacctgagaccttgaggaggagcacactcccagatcc 2512  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 157004 - 157040
Alignment:
Q  36 tcgaggaggagcacactcccagatcccaagtcaatac 72  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  157004 tcgaggaggagcacactcccagatctcaagccaatac 157040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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