View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_36 (Length: 375)
Name: NF0669_low_36
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 54 - 351
Target Start/End: Complemental strand, 39993843 - 39993541
Alignment:
| Q |
54 |
aatatagtacatgcttgatgattgtgatgaatg-nnnnnnnnnnntgaaacttaactcatcaaattacctgcgtcacgagagcatagagaggaagagtga |
152 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39993843 |
aatatagtacatgcttgatgattgtgatcaatgaaaaaaaaaaaatgaaacttaactcatcaaattacctgcgtcacgagagcatagagagggagagtga |
39993744 |
T |
|
| Q |
153 |
cgtagctgcaaaggatttgaacgaagactctgccaaataatcgatgttaattgcatacaatataaacttgatactagcatacatatttttattgtgagtg |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39993743 |
cgtagctgcaaaggatttgaacgaagactctgccaaatcatcgatgttaattgcataca--ataaacttgatactagcatacatatttttattgtgagtg |
39993646 |
T |
|
| Q |
253 |
gaatgagag------tatgtatatgagactaaccccatgcaaattctaatgacgacaccatctttacgtgaattgtagcaggatgtcaccccaaattgaa |
346 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39993645 |
gaatgagagtatgtatatgtatatgagactaaccccatgcaaattctaatgacaacaccatctttacgtgaattgtaacaggatgtcaccccaaattgaa |
39993546 |
T |
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| Q |
347 |
gctgg |
351 |
Q |
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||||| |
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| T |
39993545 |
gctgg |
39993541 |
T |
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