View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_38 (Length: 356)

Name: NF0669_low_38
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_38
NF0669_low_38
[»] chr4 (32 HSPs)
chr4 (52-350)||(48898933-48899231)
chr4 (147-350)||(45365790-45365993)
chr4 (213-334)||(45371660-45371781)
chr4 (160-298)||(7790381-7790519)
chr4 (214-351)||(48870915-48871052)
chr4 (214-351)||(48876219-48876356)
chr4 (161-333)||(48156016-48156188)
chr4 (214-351)||(48886601-48886738)
chr4 (158-250)||(7773495-7773587)
chr4 (219-350)||(48864395-48864526)
chr4 (210-302)||(49043786-49043878)
chr4 (73-250)||(7765853-7766033)
chr4 (160-250)||(7771696-7771786)
chr4 (204-250)||(7878728-7878774)
chr4 (163-248)||(7237415-7237500)
chr4 (211-350)||(48853033-48853172)
chr4 (219-299)||(49038499-49038579)
chr4 (208-247)||(7786813-7786852)
chr4 (217-292)||(45384520-45384595)
chr4 (73-134)||(7786675-7786736)
chr4 (213-250)||(7908656-7908693)
chr4 (220-265)||(47208238-47208283)
chr4 (218-299)||(48147334-48147415)
chr4 (74-115)||(50669297-50669338)
chr4 (78-118)||(37826798-37826838)
chr4 (70-122)||(48852898-48852950)
chr4 (220-250)||(48903316-48903346)
chr4 (72-134)||(49048361-49048423)
chr4 (72-128)||(7773620-7773676)
chr4 (74-106)||(7908549-7908581)
chr4 (82-122)||(45371866-45371906)
chr4 (210-250)||(50666666-50666706)
[»] chr8 (7 HSPs)
chr8 (78-350)||(15349102-15349374)
chr8 (78-289)||(12195543-12195754)
chr8 (78-289)||(12439971-12440182)
chr8 (269-350)||(4030358-4030439)
chr8 (218-248)||(4962191-4962221)
chr8 (78-136)||(12200561-12200619)
chr8 (78-136)||(12444989-12445047)
[»] chr3 (3 HSPs)
chr3 (209-350)||(47451470-47451611)
chr3 (216-250)||(11015161-11015195)
chr3 (73-197)||(11024220-11024344)
[»] chr5 (6 HSPs)
chr5 (154-303)||(9120058-9120207)
chr5 (165-250)||(179364-179449)
chr5 (209-300)||(29688479-29688570)
chr5 (219-287)||(42561966-42562034)
chr5 (209-300)||(29712061-29712152)
chr5 (73-118)||(42562129-42562174)
[»] chr6 (1 HSPs)
chr6 (212-302)||(21016174-21016264)
[»] chr7 (2 HSPs)
chr7 (211-250)||(48884176-48884215)
chr7 (78-118)||(48884049-48884089)
[»] chr1 (2 HSPs)
chr1 (213-250)||(24310570-24310607)
chr1 (213-249)||(24416132-24416168)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 52 - 350
Target Start/End: Original strand, 48898933 - 48899231
Alignment:
Q  52 atttccatccatggtatgataatgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctca 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898933 atttccatccatggtatgataatgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctca 48899032  T
Q  152 ggattgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagta 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48899033 ggattgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatataaagta 48899132  T
Q  252 aaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaagtggctatattattgga 350  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48899133 aaatcctcttggacagtgactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaagtggctatattattgga 48899231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 350
Target Start/End: Complemental strand, 45365993 - 45365790
Alignment:
Q  147 cctcaggattgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaataca 246  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| | ||||||    |||||| |||||||||||||||||||||||||||||||||||| |    
T  45365993 cctcacgattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatata 45365894  T
Q  247 aagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaagtggctatattat 346  Q
    ||||    || ||||||||   |||||  |||||||||||||||||||||||||||   ||||||| ||| || |||| ||||||||| ||  |||||||    
T  45365893 aagtgcgttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatacttttcccctttatgctctacaaaaagcggtgatattat 45365794  T
Q  347 tgga 350  Q
    ||||    
T  45365793 tgga 45365790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 45371781 - 45371660
Alignment:
Q  213 gatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactttt 312  Q
    |||||||||||||||||||| |||||||||||||||||  | || ||||||||   |||| ||||||||||||| |||||| |||| |||  ||||||||    
T  45371781 gatacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcctatcgatggcgttccaactcggtactttt 45371682  T
Q  313 acccattgtgctgtacaaaaag 334  Q
     ||||||||| |||||||||||    
T  45371681 ccccattgtgttgtacaaaaag 45371660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 7790381 - 7790519
Alignment:
Q  160 gtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctc 259  Q
    |||||||||| |||||||| ||| ||||| |||| |||    |||||| |||||||||| |||||||||||||||||||||||||||||||  | || ||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  260 ttggacggtgactcttgttcttcctattgatggcattcc 298  Q
    ||||||    |||||||||||| ||||||||| ||||||    
T  7790481 ttggactaaaactcttgttctttctattgatgccattcc 7790519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 214 - 351
Target Start/End: Original strand, 48870915 - 48871052
Alignment:
Q  214 atacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactttta 313  Q
    ||||| ||||||| ||||||||||| ||||||||||| || || ||||||||   ||||||||||||| || |||||| |||| ||  |  || |||||     
T  48870915 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttc 48871014  T
Q  314 cccattgtgctgtacaaaaagtggctatattattggag 351  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  48871015 cccattgtgctgtacaaaaagtggtgatattattggag 48871052  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 214 - 351
Target Start/End: Original strand, 48876219 - 48876356
Alignment:
Q  214 atacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactttta 313  Q
    ||||| ||||||| ||||||||||| ||||||||||| || || ||||||||   ||||||||||||| || |||||| |||| ||  |  || |||||     
T  48876219 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttc 48876318  T
Q  314 cccattgtgctgtacaaaaagtggctatattattggag 351  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  48876319 cccattgtgctgtacaaaaagtggtgatattattggag 48876356  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 333
Target Start/End: Complemental strand, 48156188 - 48156016
Alignment:
Q  161 tttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctct 260  Q
    ||||||||| |||||||| ||| ||||| |||||||||   |||  |||||||| | ||||||||||||||||||||| |||||||||||  | || |||    
T  48156188 tttgtgggtatttggagaatttctcagtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttct 48156089  T
Q  261 tggacggtgactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaa 333  Q
    |||||    |||||||| ||||||||||||||||||   ||| | | |||||||||| | |||| ||||||||    
T  48156088 tggactaaaactcttgtccttcctattgatggcatttatactctttccttttacccaatatgctctacaaaaa 48156016  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 351
Target Start/End: Original strand, 48886601 - 48886738
Alignment:
Q  214 atacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactttta 313  Q
    ||||| ||||||| ||||||||||| ||||||||||| || || ||||||||   ||||||||||||| || |||||| |||| |   |  || |||||     
T  48886601 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttctgatgagtccttttc 48886700  T
Q  314 cccattgtgctgtacaaaaagtggctatattattggag 351  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  48886701 cccattgtgctgtacaaaaagtggtgatattattggag 48886738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 7773587 - 7773495
Alignment:
Q  158 tggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 250  Q
    |||||||||||| |||||||| | | | ||| ||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||    
T  7773587 tggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 7773495  T

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Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 350
Target Start/End: Original strand, 48864395 - 48864526
Alignment:
Q  219 gttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtacttttacccat 318  Q
    ||||||||||||||||||||||||||||||||  | || ||||||||   || |||||||||||||||||||   ||| |||||  |||||||   || |    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattgattttatttccactcggtactttcttcctt 48864494  T
Q  319 tgtgctgtacaaaaagtggctatattattgga 350  Q
    | |||| ||||||||||||| |||||||||||    
T  48864495 tatgctctacaaaaagtggcgatattattgga 48864526  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 49043878 - 49043786
Alignment:
Q  210 aatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccact 302  Q
    ||||||| |||||||||||||||||||||||||||||||||  | || || |||||   |||||||||| || ||||||||| ||||||||||    
T  49043878 aatgatatagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccact 49043786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 250
Target Start/End: Original strand, 7765853 - 7766033
Alignment:
Q  73 atgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcagg---attgtggtttgtgggt 169  Q
    |||||||||||| |||||||||||||||||||| | |||| |||||| ||| |||| ||||| | || || |   |   ||   ||| ||||||||||||    
T  7765853 atgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagcattggtacattctggtttgtgggt 7765952  T
Q  170 ctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 250  Q
     | |||||| ||| |||||||||||| |    ||  | ||||||||||| |||||||||||||||||||||||||||||||    
T  7765953 atctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagt 7766033  T

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Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 7771696 - 7771786
Alignment:
Q  160 gtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 250  Q
    |||||||||| |||||||| ||| ||||| |||| |||    |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagt 7771786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 7878728 - 7878774
Alignment:
Q  204 tatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 250  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  7878728 tatgataatgatacagttgaaatatgggtgatgaaagaatacaaagt 7878774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 7237500 - 7237415
Alignment:
Q  163 tgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaa 248  Q
    ||||||| |||||||| ||| ||||| ||||||||    |||||| |||||||||| ||| |||||||||||||||||||||||||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaa 7237415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 350
Target Start/End: Original strand, 48853033 - 48853172
Alignment:
Q  211 atgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactt 310  Q
    |||||||||||||||||||||| |||||||||||||||||    || ||||||||   ||||||||||||| || ||  |  ||||||||||   |||||    
T  48853033 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttttagttccattcccactcactactt 48853132  T
Q  311 ttacccattgtgctgtacaaaaagtggctatattattgga 350  Q
    || |||| | || |||||||| |||||  |||||||||||    
T  48853133 ttccccaatatgttgtacaaagagtggtgatattattgga 48853172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 49038579 - 49038499
Alignment:
Q  219 gttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattccc 299  Q
    ||||||||||||||||||||||||||||||||  | || ||||||||   ||||||||||||  |||||  ||||||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttctgtctattagtggcattccc 49038499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 7786813 - 7786852
Alignment:
Q  208 ctaatgatacagttgaaatatgggtgatgaaagaatacaa 247  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  7786813 ctaatgatacaattgaaatatgggtgatgaaagaatacaa 7786852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 45384595 - 45384520
Alignment:
Q  217 cagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatgg 292  Q
    |||||||||||||||||||||||||||| |||||  | || ||||||||   ||||| |||||||||| |||||||    
T  45384595 cagttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttccttttgatgg 45384520  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 7786675 - 7786736
Alignment:
Q  73 atgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgat 134  Q
    |||||||||||| |||||||||||||||||||| | |||| |||||| ||| |||| |||||    
T  7786675 atgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgat 7786736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 7908656 - 7908693
Alignment:
Q  213 gatacagttgaaatatgggtgatgaaagaatacaaagt 250  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7908656 gatacacttgaaatatgggtgatgaaagaatacaaagt 7908693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 47208238 - 47208283
Alignment:
Q  220 ttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggac 265  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||||    
T  47208238 ttgaaataagggtgatgaaagaatacaaagtacaatcatcttggac 47208283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 48147415 - 48147334
Alignment:
Q  218 agttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattccc 299  Q
    |||||||||||||||||||||||||||||||||  | || ||||||||   |||||||  | |  |||||||||||||||||    
T  48147415 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatggcattccc 48147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 50669297 - 50669338
Alignment:
Q  74 tgtcattgttgcctttgatttaacggaaaggaaactgttaga 115  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  50669297 tgtcattgttgcctttgatttgatggaaaggaaactgttaga 50669338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 37826838 - 37826798
Alignment:
Q  78 attgttgcctttgatttaacggaaaggaaactgttagagat 118  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  37826838 attgttgcctttaatttaatggaaaggaaactgttagagat 37826798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 48852898 - 48852950
Alignment:
Q  70 ataatgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtct 122  Q
    ||||||| ||||| ||||||||||||| |||||||||||| |||||| |||||    
T  48852898 ataatgttattgtggcctttgatttaatggaaaggaaacttttagagttgtct 48852950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 250
Target Start/End: Original strand, 48903316 - 48903346
Alignment:
Q  220 ttgaaatatgggtgatgaaagaatacaaagt 250  Q
    |||||||||||||||||||||||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagt 48903346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 49048423 - 49048361
Alignment:
Q  72 aatgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgat 134  Q
    ||||| |||||||||||||||||||||||||| || ||  |||| |||||||  |||||||||    
T  49048423 aatgttattgttgcctttgatttaacggaaagaaaccttgtagatatgtctctgccagatgat 49048361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 7773676 - 7773620
Alignment:
Q  72 aatgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctcca 128  Q
    ||||| |||||| |||||||||||| |||||||||| |||| |||||| ||| ||||    
T  7773676 aatgtaattgtttcctttgatttaatggaaaggaaattgtttgagatgcctcttcca 7773620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 7908549 - 7908581
Alignment:
Q  74 tgtcattgttgcctttgatttaacggaaaggaa 106  Q
    ||||||||||||||||||||||| |||||||||    
T  7908549 tgtcattgttgcctttgatttaatggaaaggaa 7908581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 45371906 - 45371866
Alignment:
Q  82 ttgcctttgatttaacggaaaggaaactgttagagatgtct 122  Q
    ||||||||||||||| |||| ||||||| ||||||||||||    
T  45371906 ttgcctttgatttaatggaacggaaacttttagagatgtct 45371866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 50666666 - 50666706
Alignment:
Q  210 aatgatacagttgaaatatgggtgatgaaagaatacaaagt 250  Q
    ||||||||| ||||| ||||||||||| |||||||||||||    
T  50666666 aatgatacaattgaattatgggtgatgtaagaatacaaagt 50666706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 350
Target Start/End: Original strand, 15349102 - 15349374
Alignment:
Q  78 attgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggag 177  Q
    |||||||| ||||||||||  |||||||||||||| |||||| |||||||||||||||| ||||||  | ||   ||||||||||||||||||||||| |    
T  15349102 attgttgcatttgatttaaacgaaaggaaactgtttgagatgcctcctccagatgattttgaacatgatgctggtgattgtggtttgtgggtctttggcg 15349201  T
Q  178 attttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgt 277  Q
    | ||||| ||| | ||| || |  ||||| |||||||||   ||||||||||||||||||||||||||||||| || || ||||||||   || ||||||    
T  15349202 aattttttagtctttggtctacggattatcctaatgatagctttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgt 15349301  T
Q  278 tcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaagtggctatattattgga 350  Q
    ||||  ||||||||    ||| ||| ||||||||||||| |||||| ||||||| |||||  |||||||||||    
T  15349302 tcttaatattgatgatgatccaactctgtacttttaccctttgtgccgtacaaagagtggtgatattattgga 15349374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 289
Target Start/End: Original strand, 12195543 - 12195754
Alignment:
Q  78 attgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggag 177  Q
    ||||||| ||||||||||| |||||||||| ||||||||||  ||| |||||||||||  || |||  |||  || ||| |||||||||||| ||||||     
T  12195543 attgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggtatttggaa 12195642  T
Q  178 attttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgt 277  Q
    | ||| ||||| |||||  |   |||| || ||||   |||||||||||||||| ||||||||||||||||  | |||| ||||||||   |||||||||    
T  12195643 aatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12195742  T
Q  278 tcttcctattga 289  Q
      ||||||||||    
T  12195743 aattcctattga 12195754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 289
Target Start/End: Original strand, 12439971 - 12440182
Alignment:
Q  78 attgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggag 177  Q
    ||||||| ||||||||||| |||||||||| ||||||||||  ||| |||||||||||  || |||  |||  || ||| |||||||||||| ||||||     
T  12439971 attgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggtatttggaa 12440070  T
Q  178 attttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgt 277  Q
    | ||| ||||| |||||  |   |||| || ||||   |||||||||||||||| ||||||||||||||||  | |||| ||||||||   |||||||||    
T  12440071 aatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12440170  T
Q  278 tcttcctattga 289  Q
      ||||||||||    
T  12440171 aattcctattga 12440182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 4030439 - 4030358
Alignment:
Q  269 gactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaagtggctatattattgga 350  Q
    ||||||||||||  |||||||||||||| ||| || |||||||| |||| |||||| ||||| ||||||  |||||||||||    
T  4030439 gactcttgttctgtctattgatggcatttccattaagtacttttccccaatgtgctctacaataagtggtgatattattgga 4030358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 4962221 - 4962191
Alignment:
Q  218 agttgaaatatgggtgatgaaagaatacaaa 248  Q
    |||||||||||||||||||||||||||||||    
T  4962221 agttgaaatatgggtgatgaaagaatacaaa 4962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 12200561 - 12200619
Alignment:
Q  78 attgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgattt 136  Q
    ||||||||||||||||||| |||||||||| || |||||||   || ||||||||||||    
T  12200561 attgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgattt 12200619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 12444989 - 12445047
Alignment:
Q  78 attgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgattt 136  Q
    ||||||||||||||||||| |||||||||| || |||||||   || ||||||||||||    
T  12444989 attgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgattt 12445047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 209 - 350
Target Start/End: Complemental strand, 47451611 - 47451470
Alignment:
Q  209 taatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtac 308  Q
    |||||||| ||||||||||||||||||||||||||||||||| || || ||||||     ||||||||||||||||||||||||||||||| ||  ||||    
T  47451611 taatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgatggcattccctctcagtac 47451512  T
Q  309 ttttacccattgtgctgtacaaaaagtggctatattattgga 350  Q
    |||||||| ||   || ||||||||||||  |||||||||||    
T  47451511 ttttaccccttaacctctacaaaaagtggtgatattattgga 47451470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 11015195 - 11015161
Alignment:
Q  216 acagttgaaatatgggtgatgaaagaatacaaagt 250  Q
    ||||||||||||||||| |||||||||||||||||    
T  11015195 acagttgaaatatgggttatgaaagaatacaaagt 11015161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 11024344 - 11024220
Alignment:
Q  73 atgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctt 172  Q
    |||| ||| ||||||||||||||  ||||||| |||| || |||||| ||  |||||||| ||| || |||   |||  |||||||| ||||||| | ||    
T  11024344 atgttattattgcctttgatttagtggaaagggaacttttggagatgccttttccagatggttttgatcatgaacctatggattgtgatttgtggatatt 11024245  T
Q  173 tggagattttttcagtatatgggct 197  Q
    |||||| ||| ||||| ||||||||    
T  11024244 tggagaatttctcagtctatgggct 11024220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 154 - 303
Target Start/End: Original strand, 9120058 - 9120207
Alignment:
Q  154 attgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaa 253  Q
    |||||| | ||||||| |||||||| ||| ||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||  |    
T  9120058 attgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgca 9120157  T
Q  254 atcctcttggacggtgactcttgttcttcctattgatggcattcccacta 303  Q
     |||||||||| |   ||||||||| |  ||||||| |||||| ||||||    
T  9120158 ttcctcttggaagaaaactcttgttttgtctattgacggcatttccacta 9120207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 179364 - 179449
Alignment:
Q  165 tgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 250  Q
    ||||| |||||| | ||| ||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  179364 tgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagt 179449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 29688479 - 29688570
Alignment:
Q  209 taatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattccca 300  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||  |||| ||||||||   |||||| |||||| || ||| || ||||||||    
T  29688479 taatggtacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattccca 29688570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 42562034 - 42561966
Alignment:
Q  219 gttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctatt 287  Q
    ||||| ||||||||||||||||||||||||||  | || ||||||||   || ||||||||||||||||    
T  42562034 gttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttcttcctatt 42561966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 29712152 - 29712061
Alignment:
Q  209 taatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattccca 300  Q
    ||||| |||||||||||||||||||||| || ||||||| || | ||| ||||||||   |||||||||| |  || ||||||| |||||||    
T  29712152 taatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgttttgtcttttgatggaattccca 29712061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 42562174 - 42562129
Alignment:
Q  73 atgtcattgttgcctttgatttaacggaaaggaaactgttagagat 118  Q
    |||| |||||||||||| |||||||||||||||||||  |||||||    
T  42562174 atgttattgttgcctttcatttaacggaaaggaaacttctagagat 42562129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 21016174 - 21016264
Alignment:
Q  212 tgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccact 302  Q
    ||||| ||||||||||||||| |||||||||||||||||| | || ||||||||   |||||||  | |  ||||||||| ||||||||||    
T  21016174 tgatatagttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcccact 21016264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 48884176 - 48884215
Alignment:
Q  211 atgatacagttgaaatatgggtgatgaaagaatacaaagt 250  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  48884176 atgataaagttgaaatataggtgatgaaagaatacaaagt 48884215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 48884049 - 48884089
Alignment:
Q  78 attgttgcctttgatttaacggaaaggaaactgttagagat 118  Q
    |||| |||||||||||||| ||||| |||||||||||||||    
T  48884049 attgctgcctttgatttaatggaaaagaaactgttagagat 48884089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 24310570 - 24310607
Alignment:
Q  213 gatacagttgaaatatgggtgatgaaagaatacaaagt 250  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  24310570 gataaagttgatatatgggtgatgaaagaatacaaagt 24310607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 24416132 - 24416168
Alignment:
Q  213 gatacagttgaaatatgggtgatgaaagaatacaaag 249  Q
    |||| |||||| |||||||||||||||||||||||||    
T  24416132 gatagagttgatatatgggtgatgaaagaatacaaag 24416168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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