View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0669_low_4 (Length: 590)
Name: NF0669_low_4
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 535
Target Start/End: Complemental strand, 5159757 - 5159249
Alignment:
| Q |
20 |
gacatcatcataaaaatcttaaagtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaatca |
115 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5159757 |
gacattatcataaaaatcttaaagtttttccaatggcgtcaatatatacattaattaacttatttcattgtttttgttaattatttaaaatttaaaatca |
5159658 |
T |
|
| Q |
116 |
ataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcataccttgaat |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5159657 |
ataaaaaagttatcttcattgtaacaatccatccc------------gtgaagcagttatgaattaattatttgtgtttggtagtattcataccttcaat |
5159570 |
T |
|
| Q |
216 |
tgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcag-nnnnnnnngagagtacatagttagagatata |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5159569 |
tgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagaaaaaaaaagagagtacatagttagagatata |
5159470 |
T |
|
| Q |
315 |
attttcaataaataaatctgtaagaactattcccc-nnnnnnntttacaaattatgtttgactatttaaaaaatttcaagnnnnnnnngagtgcatatga |
413 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5159469 |
a-tttcaataaataaatctgtaagaactattccccaaaaaaaatttacaaattatgtttgactatttaaaaaatttcaagttttttttgagtgcatatga |
5159371 |
T |
|
| Q |
414 |
caaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggcatgggaatatgattaagatgtcatttactcattgaagtcggcata |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
5159370 |
caaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattgaagttggcaac |
5159271 |
T |
|
| Q |
514 |
ctaccgcgtcaaagaggaaatg |
535 |
Q |
| |
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||| |||||||||||| ||||| |
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|
| T |
5159270 |
ctatcgcgtcaaagagaaaatg |
5159249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 5195403 - 5195065
Alignment:
| Q |
20 |
gacatcatcataaaaatcttaaa-gtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaatc |
114 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||| |
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| T |
5195403 |
gacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcgttgtttttgttaattatttaaaatttaaaata |
5195304 |
T |
|
| Q |
115 |
aataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcataccttgaa |
214 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |
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| T |
5195303 |
aaaaaaaaagttatcttcattgtaacaatcgatccccaaaaccatcccgtgaagcaattatgaattaattatttgtgtttggtagtattgataccttcaa |
5195204 |
T |
|
| Q |
215 |
ttgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcag----nnnnnnnngagagtacatagttagaga |
310 |
Q |
| |
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||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5195203 |
ttgagccgttcatttgattatcgtttaaacttaacattttcaaatttttcaaatgttgaacatctgcagaagaaaaaaaaagagagtacatagttagaga |
5195104 |
T |
|
| Q |
311 |
tataattttcaataaataaatctgtaagaactattcccc |
349 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5195103 |
tataattttcaataaataaatcggtaagaactattcccc |
5195065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 5182005 - 5181710
Alignment:
| Q |
20 |
gacatcatcataaaaatcttaaa-gtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaatc |
114 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
5182005 |
gacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcattctttttgttaattatttaaaatttaaaatc |
5181906 |
T |
|
| Q |
115 |
aataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcataccttgaa |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
5181905 |
aatataaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcaattatgaattaattatttgtgtttggtagtattgataccttcaa |
5181806 |
T |
|
| Q |
215 |
ttgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnngagagtacatagttagaga |
310 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5181805 |
ttgagccgttcatttgattatttcttaaacttaacattttcaagtttttcaaatgttgaacatctgcaggaaaaaaagagagtacatagttagaga |
5181710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 404 - 537
Target Start/End: Complemental strand, 5181608 - 5181475
Alignment:
| Q |
404 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggcatgggaatatgattaagatgtcatttactcattga |
503 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||| |
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|
| T |
5181608 |
gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattga |
5181509 |
T |
|
| Q |
504 |
agtcggcatactaccgcgtcaaagaggaaatggc |
537 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| |
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| T |
5181508 |
agtcggcaacctatcgcgtcaaagaggaaatggc |
5181475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 5172594 - 5172489
Alignment:
| Q |
177 |
aattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaaca |
276 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |
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|
| T |
5172594 |
aattaattatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaacttaacattttcaattttttcaagtgttgaaca |
5172495 |
T |
|
| Q |
277 |
tctgca |
282 |
Q |
| |
|
|||||| |
|
|
| T |
5172494 |
tctgca |
5172489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 4843028 - 4843133
Alignment:
| Q |
177 |
aattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaaca |
276 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
4843028 |
aattaattatttatgtttgatagtattgataccttcaattgagcccttcatttgattatcgcttaaccttaacattttcaagtttttcaaatgttgaaca |
4843127 |
T |
|
| Q |
277 |
tctgca |
282 |
Q |
| |
|
|||||| |
|
|
| T |
4843128 |
tctgca |
4843133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 5212815 - 5212716
Alignment:
| Q |
182 |
attatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgc |
281 |
Q |
| |
|
||||||||||||||||| |||| ||||||| || |||||||||||||||||| | || |||| ||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
5212815 |
attatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcataaacttagcattttcaagtttctcaaatgttgaacatctgc |
5212716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 5194882 - 5194830
Alignment:
| Q |
485 |
gatgtcatttactcattgaagtcggcatactaccgcgtcaaagaggaaatggc |
537 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
5194882 |
gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatggc |
5194830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 4842849 - 4842927
Alignment:
| Q |
21 |
acatcatcataaaaatcttaaagtttttccaatggcgtcaatatatacatca----acttatttcattgtttttgttaa |
95 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||| |
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|
| T |
4842849 |
acattatcataaaaatcttaaagtttttccaatggactcaatatataaattaatttacttatttcattgtttttgttaa |
4842927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 474 - 535
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
| Q |
474 |
aatatgattaagatgtcatttactcattgaagtcggcatactaccgcgtcaaagaggaaatg |
535 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
4843278 |
aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg |
4843339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 5172677 - 5172630
Alignment:
| Q |
20 |
gacatcatcataaaaatcttaaagtttttccaatggcgtcaatatata |
67 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5172677 |
gacattatcataaaaatcttaaagtttttccaatggactcaatatata |
5172630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 4843149 - 4843183
Alignment:
| Q |
293 |
agagtacatagttagagatataattttcaataaat |
327 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
4843149 |
agagtacatagttagagatataatattcaataaat |
4843183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 575
Target Start/End: Original strand, 4843424 - 4843461
Alignment:
| Q |
538 |
aagagtattatgtggagagtgacaaaacatattttttc |
575 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
4843424 |
aagagtattatgtggagagtggcaaaccatattttttc |
4843461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 571
Target Start/End: Complemental strand, 5172135 - 5172102
Alignment:
| Q |
538 |
aagagtattatgtggagagtgacaaaacatattt |
571 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
5172135 |
aagagtattatgtggagagtggcaaaacatattt |
5172102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 467
Target Start/End: Complemental strand, 5172374 - 5172342
Alignment:
| Q |
435 |
caaattcttggagaatcctagatgacaaattgg |
467 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
5172374 |
caaattcttggagaatccttgatgacaaattgg |
5172342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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