View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_40 (Length: 353)
Name: NF0669_low_40
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_40 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 47 - 353
Target Start/End: Complemental strand, 25141212 - 25140907
Alignment:
| Q |
47 |
aagaatataatagagaaccataataaacttcaattataaccatatattccaccatagctagatagaatgtacctttcattgcggttaagacgagctccaa |
146 |
Q |
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| T |
25141212 |
aagactataatagagaaccataataaacatcaattataaccatatattccacc-tagctagatagaatgtacctttcattgcggttaagacgagctccga |
25141114 |
T |
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| Q |
147 |
gatagaacgccacagaaagcaaccatgaatcactgtgcacagcaacaagagaaagccaatccctacggttcataccatctcgaataatattgattccaag |
246 |
Q |
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| T |
25141113 |
gatagaaggccacagaaagcaaccatgaatcactgtgcacagcaacaagagaaagccaatccctacggttcatgccgtctcgagcaaaattgattccaag |
25141014 |
T |
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| Q |
247 |
agctggctcagggagttccggcggaacttcctctgctggcagagttacttcccagctttcattattatgaccatagaggcacaaattatccttatctaaa |
346 |
Q |
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| T |
25141013 |
agctggctcagggagttccggcggaacttcctctgctggcagagttacttcccagctttcattattatgaccatagaggcacaaattatccttatctaaa |
25140914 |
T |
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| Q |
347 |
caaacac |
353 |
Q |
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| T |
25140913 |
caaacac |
25140907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 115 - 343
Target Start/End: Original strand, 4790030 - 4790258
Alignment:
| Q |
115 |
gtacctttcattgcggttaagacgagctccaagatagaacgccacagaaagcaaccatgaatcactgtgcacagcaacaagagaaagccaatccctacgg |
214 |
Q |
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| T |
4790030 |
gtacctttcgttgcggttaagacgagctccaagataaaaagccacagaaagcaaccatgaatcactgtgcacagcaactagagaaagccagtccctacgg |
4790129 |
T |
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| Q |
215 |
ttcataccatctcgaataatattgattccaagagctggctcagggagttccggcggaacttcctctgctggcagagttacttcccagctttcattattat |
314 |
Q |
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| T |
4790130 |
ttcatgccatcccttgcaaagttgattccaagggctggctctggaagctcaggtggaacttcctcagcaggaagagtcacttcccatgattcatttgtat |
4790229 |
T |
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| Q |
315 |
gaccatagaggcacaaattatccttatct |
343 |
Q |
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| T |
4790230 |
gtccatagagacacaaattgtccttatct |
4790258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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