View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_46 (Length: 330)

Name: NF0669_low_46
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_46
NF0669_low_46
[»] scaffold0525 (1 HSPs)
scaffold0525 (107-136)||(4779-4808)
[»] scaffold0299 (1 HSPs)
scaffold0299 (107-140)||(6338-6371)
[»] scaffold0109 (1 HSPs)
scaffold0109 (107-136)||(36878-36907)
[»] chr8 (1 HSPs)
chr8 (107-136)||(15924176-15924205)
[»] chr7 (2 HSPs)
chr7 (107-136)||(18424811-18424840)
chr7 (107-136)||(26291520-26291549)
[»] chr6 (3 HSPs)
chr6 (107-136)||(1643698-1643727)
chr6 (107-136)||(14471450-14471479)
chr6 (107-136)||(18918296-18918325)
[»] chr5 (1 HSPs)
chr5 (107-136)||(40724456-40724485)
[»] chr4 (3 HSPs)
chr4 (107-136)||(15224009-15224038)
chr4 (107-136)||(17807324-17807353)
chr4 (107-136)||(27533087-27533116)
[»] chr3 (8 HSPs)
chr3 (107-136)||(4589762-4589791)
chr3 (107-140)||(11301077-11301110)
chr3 (107-140)||(11854150-11854183)
chr3 (107-140)||(12339011-12339044)
chr3 (99-136)||(15464402-15464439)
chr3 (107-136)||(16751490-16751519)
chr3 (107-136)||(17318057-17318086)
chr3 (107-136)||(19774686-19774715)
[»] chr2 (1 HSPs)
chr2 (107-136)||(12902306-12902335)
[»] chr1 (1 HSPs)
chr1 (107-136)||(41389208-41389237)


Alignment Details
Target: scaffold0525 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 4808 - 4779
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  4808 cataacaacttaacaatatcataatcaata 4779  T

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Target: scaffold0299 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 6338 - 6371
Alignment:
Q  107 cataacaacttaacaatatcataatcaatacctt 140  Q
    ||||||||| ||||||||||||||||||||||||    
T  6338 cataacaacataacaatatcataatcaatacctt 6371  T

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Target: scaffold0109 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 36907 - 36878
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  36907 cataacaacttaacaatatcataatcaata 36878  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 15924205 - 15924176
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  15924205 cataacaacttaacaatatcataatcaata 15924176  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 18424811 - 18424840
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  18424811 cataacaacttaacaatatcataatcaata 18424840  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 26291520 - 26291549
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  26291520 cataacaacttaacaatatcataatcaata 26291549  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 1643698 - 1643727
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  1643698 cataacaacttaacaatatcataatcaata 1643727  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 14471450 - 14471479
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  14471450 cataacaacttaacaatatcataatcaata 14471479  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 18918325 - 18918296
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  18918325 cataacaacttaacaatatcataatcaata 18918296  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 40724485 - 40724456
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  40724485 cataacaacttaacaatatcataatcaata 40724456  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 15224009 - 15224038
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  15224009 cataacaacttaacaatatcataatcaata 15224038  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 17807324 - 17807353
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  17807324 cataacaacttaacaatatcataatcaata 17807353  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 27533087 - 27533116
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  27533087 cataacaacttaacaatatcataatcaata 27533116  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 4589791 - 4589762
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  4589791 cataacaacttaacaatatcataatcaata 4589762  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 11301110 - 11301077
Alignment:
Q  107 cataacaacttaacaatatcataatcaatacctt 140  Q
    ||||||||| ||||||||||||||||||||||||    
T  11301110 cataacaacataacaatatcataatcaatacctt 11301077  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 11854150 - 11854183
Alignment:
Q  107 cataacaacttaacaatatcataatcaatacctt 140  Q
    ||||||||| ||||||||||||||||||||||||    
T  11854150 cataacaacataacaatatcataatcaatacctt 11854183  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 12339011 - 12339044
Alignment:
Q  107 cataacaacttaacaatatcataatcaatacctt 140  Q
    ||||||||| ||||||||||||||||||||||||    
T  12339011 cataacaacataacaatatcataatcaatacctt 12339044  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 15464402 - 15464439
Alignment:
Q  99 atcaatagcataacaacttaacaatatcataatcaata 136  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  15464402 atcaatatcataacaacataacaatatcataatcaata 15464439  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 16751519 - 16751490
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  16751519 cataacaacttaacaatatcataatcaata 16751490  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 17318086 - 17318057
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  17318086 cataacaacttaacaatatcataatcaata 17318057  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 19774686 - 19774715
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  19774686 cataacaacttaacaatatcataatcaata 19774715  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 12902335 - 12902306
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  12902335 cataacaacttaacaatatcataatcaata 12902306  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 41389237 - 41389208
Alignment:
Q  107 cataacaacttaacaatatcataatcaata 136  Q
    ||||||||||||||||||||||||||||||    
T  41389237 cataacaacttaacaatatcataatcaata 41389208  T

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