View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_47 (Length: 328)
Name: NF0669_low_47
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 287
Target Start/End: Original strand, 3641172 - 3641429
Alignment:
| Q |
30 |
gttgtggttttggattgtgttggttttgatgattctgtccccaaaatagcagtgaaatcgttgtttaagccattggaaagaatccaagattactcgaaga |
129 |
Q |
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| T |
3641172 |
gttgtggttttggattgtgttggttttgatgattctgtctccaaaatagcagtgaaatcgttgtttaagccattggaaagaatccaagattactcgaaga |
3641271 |
T |
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| Q |
130 |
aatgtatgaaattggaaagattgtcttgtggcaagcaaggttgatctacttacatcccaggtttcacttacaaagttagatagagggattccacaagatg |
229 |
Q |
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| T |
3641272 |
aatgtatgaaattggaaagattgtcttgtggcaagcaaggttgatctacttacatcccaggtttcacttacaaagttagatagagggattccacaagatg |
3641371 |
T |
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| Q |
230 |
caagtgctggatgaacgccctagttaagcgcaatttttctattctttgttttacacct |
287 |
Q |
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| T |
3641372 |
caagtgctggatgaacgccctagttaagcgcaatttttctattctttgttttacacct |
3641429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 35677716 - 35677643
Alignment:
| Q |
34 |
tggttttggattgtgttggttttgatgattctgtccccaaaatagcagtgaaatcgttgtttaagccattggaa |
107 |
Q |
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| T |
35677716 |
tggttgtggattgtgttgattttgatggttctttcccgagaacagctgtgaagtcgttgtttaaggcattggaa |
35677643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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