View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_6 (Length: 537)
Name: NF0669_low_6
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 228 - 526
Target Start/End: Complemental strand, 3272028 - 3271730
Alignment:
| Q |
228 |
acaagatatgtaattcaccttgcagtattgttttggagatagcacattctgtggtcctccatcatattagattctttgtctcacagctcagcatagcgtt |
327 |
Q |
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| T |
3272028 |
acaagatatgtaattcaccttgcaatattgttttggagatagcacattctgtggtcctccatcatattagattctttgtctcacagctcagcatagcgtt |
3271929 |
T |
|
| Q |
328 |
ttgtgtttgtttttaacatttgttccatgcattcaccgtttgtccaaatgttagaacatctgcttaaattcaatgtcttaaacaattgtctctatgtgat |
427 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3271928 |
ttgtgtttgtttttaacatttgttccatgtattcaccgtttgtccaaatgttagaacatctgcttaaattcaatgtcttaaacaattgtctctatgtgat |
3271829 |
T |
|
| Q |
428 |
ggaagagtatatattgatcattcacagaggtccagattggatttcaataccattacaaattgaatatgataccataaatgatagtaataaactattcat |
526 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
3271828 |
ggaagagtatatattgatcattcacagagctccagattggatttcaataccattacaaattgaataggataccataaatgatagtaatgaactattcat |
3271730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 96 - 206
Target Start/End: Complemental strand, 3272223 - 3272113
Alignment:
| Q |
96 |
aaataaagtctgaccaataattatttttactagaaatcgaacttagtttttcctgaacgattaattctagagagctcattaaccatttgagcaaaatcac |
195 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3272223 |
aaataaagtctgaccaataattatttctactaggaatcgaacttagtttttcctgaacgattaattctagagagctcattaaccatttgaacaaaatcac |
3272124 |
T |
|
| Q |
196 |
ttgattaatgg |
206 |
Q |
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| T |
3272123 |
ttgattaatgg |
3272113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 46476972 - 46476900
Alignment:
| Q |
129 |
aaatcgaacttagtttttcctgaacgattaattctaga-gagctcattaaccatttgagcaaaatcacttgatt |
201 |
Q |
| |
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||||||||||| |||| |||||||||||| ||||||| |||||||||||||| |||||| |||||||||||| |
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| T |
46476972 |
aaatcgaactttgtttctcctgaacgattcgttctagaggagctcattaacca-ttgagctcaatcacttgatt |
46476900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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