View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_63 (Length: 293)

Name: NF0669_low_63
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_63
NF0669_low_63
[»] chr1 (11 HSPs)
chr1 (30-270)||(9495210-9495450)
chr1 (30-118)||(9466669-9466757)
chr1 (31-134)||(9300162-9300265)
chr1 (79-134)||(9420670-9420725)
chr1 (79-134)||(9437753-9437808)
chr1 (67-128)||(11026285-11026346)
chr1 (67-128)||(11040988-11041049)
chr1 (166-194)||(9242611-9242639)
chr1 (30-134)||(9257444-9257548)
chr1 (166-194)||(9257580-9257608)
chr1 (64-104)||(10930649-10930689)
[»] chr3 (1 HSPs)
chr3 (31-134)||(9171571-9171674)
[»] chr4 (2 HSPs)
chr4 (67-110)||(27696125-27696168)
chr4 (169-266)||(27695969-27696066)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 9495450 - 9495210
Alignment:
Q  30 attatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9495450 attatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttc 9495351  T
Q  130 tcccaactcaaaaagtggtttttgaaatccgttgtggaaatgaatttctgcaacgaaccatttggtaaatactcgtacacaagagctcgtgtgtgtccat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9495350 tcccaactcaaaaagtggtttttgaaatccgttgtggaaatgaatttctgcaacgaaccatttggtaaatactcgtacacaagagctcgtgtgtgtccat 9495251  T
Q  230 cggcacaaaagccaactaagtgaacaacattgacgtgatga 270  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9495250 cggcacaaaagccaactaagtgaacaacattgacgtgatga 9495210  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 9466669 - 9466757
Alignment:
Q  30 attatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaattt 118  Q
    ||||||||| || || ||||||||||| || || || ||||| ||||| ||||||||||||||||| || ||||| || || |||||||    
T  9466669 attatgaggattgatgtcaaagtgaagaattctttgatcacaaccttggtgaagatactcaattccattggctatgcctagagcaattt 9466757  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 9300265 - 9300162
Alignment:
Q  31 ttatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttct 130  Q
    |||||||| || || ||||||||||| || || || ||||| ||||| ||||||||||| ||||| || ||||| || || ||||||| ||| ||||| |    
T  9300265 ttatgaggattgatgtcaaagtgaagaattctttgatcacaaccttggtgaagatactctattccattggctatgcctagagcaatttgttgcaacttat 9300166  T
Q  131 ccca 134  Q
    ||||    
T  9300165 ccca 9300162  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 9420670 - 9420725
Alignment:
Q  79 tgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttctccca 134  Q
    |||||||||||||| ||||| ||||| ||||| ||||||| ||||| |||||||||    
T  9420670 tgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctccca 9420725  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 9437753 - 9437808
Alignment:
Q  79 tgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttctccca 134  Q
    |||||||||||||| ||||| ||||| ||||| ||||||| ||||| |||||||||    
T  9437753 tgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctccca 9437808  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 11026346 - 11026285
Alignment:
Q  67 tcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaactt 128  Q
    ||||| |||||||||||||| ||||||||||| |||||||| |  |||||||| || |||||    
T  11026346 tcacaaccttgatgaagatattcaattcctttagctattcctaaagcaatttcgtgcaactt 11026285  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 11041049 - 11040988
Alignment:
Q  67 tcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaactt 128  Q
    ||||| |||||||||||||| ||||||||||| |||||||| |  |||||||| || |||||    
T  11041049 tcacaaccttgatgaagatattcaattcctttagctattcctaaagcaatttcgtgcaactt 11040988  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 9242611 - 9242639
Alignment:
Q  166 gaaatgaatttctgcaacgaaccatttgg 194  Q
    |||||||||||||||||||||||||||||    
T  9242611 gaaatgaatttctgcaacgaaccatttgg 9242639  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 9257444 - 9257548
Alignment:
Q  30 attatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttc 129  Q
    ||||||||| || || ||||||||||| || || || ||||| | ||| ||||||||||| ||||| || ||||| || || ||||||| ||| |||||     
T  9257444 attatgaggattgatgtcaaagtgaagaattctttgatcacaactttggtgaagatactcgattccattggctatgcctagagcaatttgttgcaacttg 9257543  T
Q  130 tccca 134  Q
    |||||    
T  9257544 tccca 9257548  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 9257580 - 9257608
Alignment:
Q  166 gaaatgaatttctgcaacgaaccatttgg 194  Q
    |||||||||||||||||||||||||||||    
T  9257580 gaaatgaatttctgcaacgaaccatttgg 9257608  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 10930689 - 10930649
Alignment:
Q  64 tggtcacatccttgatgaagatactcaattcctttcgctat 104  Q
    |||||||| ||||||||||||||||||| |||||| |||||    
T  10930689 tggtcacaaccttgatgaagatactcaactcctttagctat 10930649  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 9171674 - 9171571
Alignment:
Q  31 ttatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttct 130  Q
    |||||||| || || ||||||||||| || || || ||||| ||||| || |||||||||||||| || |||||||| || ||||||| ||| ||||| |    
T  9171674 ttatgaggattaatgtcaaagtgaagaattctttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaacttgt 9171575  T
Q  131 ccca 134  Q
    ||||    
T  9171574 ccca 9171571  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 27696168 - 27696125
Alignment:
Q  67 tcacatccttgatgaagatactcaattcctttcgctattccaag 110  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||    
T  27696168 tcacaaccttgatgaagatactcaattcccttcgctataccaag 27696125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 27696066 - 27695969
Alignment:
Q  169 atgaatttctgcaacgaaccatttggtaaatactcgtacacaagagctcgtgtgtgtccatcggcacaaaagccaactaagtgaacaacattgacgtg 266  Q
    ||||| |||||||||||||| ||||||||| | || ||||| |  |||||| ||| |||||| |||||||| ||||| ||| || | || ||||||||    
T  27696066 atgaaattctgcaacgaaccttttggtaaaaattcatacaccaaggctcgtttgtttccatctgcacaaaaaccaaccaagcgagccacgttgacgtg 27695969  T

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