View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_64 (Length: 292)
Name: NF0669_low_64
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 40368998 - 40369195
Alignment:
| Q |
48 |
ctccaacaatatgcctattactattagctctaaaacttcacacaaacctgggctatttcttcagaagtgctaatcatccgtgctctgcttttaaggcttg |
147 |
Q |
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| T |
40368998 |
ctcctacaatatgcctattactattagctctaaaacttcacacaaacctgggctatttcttcagaagtgctaatcatccgtgctctgcttttaaggcttg |
40369097 |
T |
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| Q |
148 |
tgacaacagcgtcaacagccatatttatacctcgcctcaggtccatcgcattcattccagcggcaactgatttgcagccttcggaaaatattgttcga |
245 |
Q |
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| T |
40369098 |
tgacaacagcgtcaacagccatatttatacctcgcctcaggtccatcgcattcattccagcggcaactgatttgcagccttcggaaaatattgctcga |
40369195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 87 - 240
Target Start/End: Original strand, 40379888 - 40380041
Alignment:
| Q |
87 |
acacaaacctgggctatttcttcagaagtgctaatcatccgtgctctgcttttaaggcttgtgacaacagcgtcaacagccatatttatacctcgcctca |
186 |
Q |
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||||||||||| |||||||||||||||||||| ||||| |||||||||||||| | | |||| |||||||| |||||||||||||||||||||||||||| |
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| T |
40379888 |
acacaaacctgagctatttcttcagaagtgctgatcattcgtgctctgcttttcaagtttgtcacaacagcatcaacagccatatttatacctcgcctca |
40379987 |
T |
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| Q |
187 |
ggtccatcgcattcattccagcggcaactgatttgcagccttcggaaaatattg |
240 |
Q |
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| T |
40379988 |
ggtccattgcattcattccagctgctactgatttgcatccttccgtaaatattg |
40380041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 240
Target Start/End: Complemental strand, 13621197 - 13621045
Alignment:
| Q |
87 |
acacaaacctgggctatttcttcagaagtgctaatcatccgtgctctgcttttaaggcttgtgacaacagcgtcaacagccatatttatacctcgcctca |
186 |
Q |
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| T |
13621197 |
acacatacctgagctatttcttcggaagtgtcgatcattcgtgctctgcttttcaagtttgtcacaacagcatcaacatccatatttatacctcgcctca |
13621098 |
T |
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| Q |
187 |
ggtccatcgcattcattccagcggcaactgatttgcagccttcggaaaatattg |
240 |
Q |
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| T |
13621097 |
gatccattgcattcatt-cagctgctactgatttgcatccttccgtaaatattg |
13621045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 240
Target Start/End: Original strand, 52039503 - 52039655
Alignment:
| Q |
87 |
acacaaacctgggctatttcttcagaagtgctaatcatccgtgctctgcttttaaggcttgtgacaacagcgtcaacagccatatttatacctcgcctca |
186 |
Q |
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| T |
52039503 |
acacatacctgagttatttcttcggaagtgtcaatcattcgtgctctgcttttcaagtttgtcacaacagcatcaacatccatatttatacctcgcctca |
52039602 |
T |
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| Q |
187 |
ggtccatcgcattcattccagcggcaactgatttgcagccttcggaaaatattg |
240 |
Q |
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| T |
52039603 |
gatccattgcattcatt-cagctgctactgatttgcatccttccgtaaatattg |
52039655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 87 - 240
Target Start/End: Complemental strand, 41049286 - 41049133
Alignment:
| Q |
87 |
acacaaacctgggctatttcttcagaagtgctaatcatccgtgctctgcttttaaggcttgtgacaacagcgtcaacagccatatttatacctcgcctca |
186 |
Q |
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||||| ||||| |||||||||||||||||| |||||| || ||||||||||| | | |||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
41049286 |
acacatacctgagctatttcttcagaagtgtcaatcattcgcgctctgcttttcaagtttgtcacaacagcatcaacatccatatttatacctcgcctca |
41049187 |
T |
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| Q |
187 |
ggtccatcgcattcattccagcggcaactgatttgcagccttcggaaaatattg |
240 |
Q |
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| T |
41049186 |
gatccattgcattcattccagctgctactgatttgcatccttccgtaaatattg |
41049133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 13676073 - 13676225
Alignment:
| Q |
87 |
acacaaacctgggctatttcttcagaagtgctaatcatccgtgctctgcttttaaggcttgtgacaacagcgtcaacagccatatttatacctcgcctca |
186 |
Q |
| |
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||||| ||||| |||||||||||||||||| ||||| |||||||||||||| | | |||| |||||| | |||||| |||||||||||||||| |||| |
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| T |
13676073 |
acacatacctgagctatttcttcagaagtgtcgatcattcgtgctctgcttttcaagtttgtcacaacaacatcaacatccatatttatacctcgtctca |
13676172 |
T |
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| Q |
187 |
ggtccatcgcattcattccagcggcaactgatttgcagccttcggaaaatatt |
239 |
Q |
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| T |
13676173 |
gatccattgcattcattccagctgctactgatttgcatccttccgtaaatatt |
13676225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 21891102 - 21891232
Alignment:
| Q |
99 |
gctatttcttcagaagtgctaatcatccgtgctctgcttttaaggcttgtgacaacagcgtcaacagccatatttatacctcgcctcaggtccatcgcat |
198 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| | | |||| |||||||| |||| | |||||||||||||||||||||| ||||| |||| |
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| T |
21891102 |
gctatttcttcagaagtgtcgatcattcgtgctctgcttttcaagtttgtcacaacagcatcaaaatccatatttatacctcgcctcagatccattgcat |
21891201 |
T |
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| Q |
199 |
tcattccagcggcaactgatttgcagccttc |
229 |
Q |
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| T |
21891202 |
tcattccagctgctactgatttgcatccttc |
21891232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 240
Target Start/End: Original strand, 1687174 - 1687326
Alignment:
| Q |
87 |
acacaaacctgggctatttcttcagaagtgctaatcatccgtgctctgcttttaaggcttgtgacaacagcgtcaacagccatatttatacctcgcctca |
186 |
Q |
| |
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||||| ||||| | ||||||||| |||||| |||||| |||||||||||||| | | |||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
1687174 |
acacatacctgagttatttcttcggaagtgtcaatcattcgtgctctgcttttcaagtttgtcacaacagcatcaacatccatatttatacctcgcctca |
1687273 |
T |
|
| Q |
187 |
ggtccatcgcattcattccagcggcaactgatttgcagccttcggaaaatattg |
240 |
Q |
| |
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| T |
1687274 |
gatccattgcattcatt-cagctgctactgatttgcatccttccgtaaatattg |
1687326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 239
Target Start/End: Complemental strand, 19964647 - 19964493
Alignment:
| Q |
87 |
acacaaacctgggctatttcttcagaagtgctaatcatccgtgctctgcttttaaggcttgtgacaacagcgtcaacagccatatttat--acctcgcct |
184 |
Q |
| |
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||||| ||||| |||||||||||||||||| ||||| ||| |||||||||| | | |||| |||||| | |||||| |||||||||| ||||||||| |
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| T |
19964647 |
acacatacctgagctatttcttcagaagtgtcgatcattcgtactctgcttttcaagtttgtcacaacaacatcaacatccatatttatacacctcgcct |
19964548 |
T |
|
| Q |
185 |
caggtccatcgcattcattccagcggcaactgatttgcagccttcggaaaatatt |
239 |
Q |
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| T |
19964547 |
caaatccattgcattcattccagctgctactgatttgcatccttccgtaaatatt |
19964493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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