View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_69 (Length: 287)

Name: NF0669_low_69
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_69
NF0669_low_69
[»] chr1 (2 HSPs)
chr1 (67-107)||(48404285-48404325)
chr1 (70-106)||(48388185-48388221)
[»] chr5 (3 HSPs)
chr5 (67-106)||(42807074-42807113)
chr5 (67-106)||(30648187-30648226)
chr5 (70-104)||(27407120-27407154)
[»] chr4 (4 HSPs)
chr4 (67-112)||(38173508-38173553)
chr4 (71-104)||(13110522-13110555)
chr4 (68-101)||(52017308-52017341)
chr4 (70-106)||(3533384-3533420)
[»] chr7 (2 HSPs)
chr7 (67-104)||(40302565-40302602)
chr7 (72-103)||(22656629-22656660)
[»] chr3 (1 HSPs)
chr3 (67-100)||(41183240-41183273)
[»] chr8 (1 HSPs)
chr8 (72-104)||(15053592-15053624)
[»] scaffold0054 (1 HSPs)
scaffold0054 (67-106)||(57817-57856)


Alignment Details
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 48404325 - 48404285
Alignment:
Q  67 gagggttgttgaatatttgtgaccattgtaaatggtcttat 107  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48404325 gagggttgttgaatatttgtgaccattgtaaatggtcttat 48404285  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 48388185 - 48388221
Alignment:
Q  70 ggttgttgaatatttgtgaccattgtaaatggtctta 106  Q
    |||||||||||||| || |||||||||||||||||||    
T  48388185 ggttgttgaatattagttaccattgtaaatggtctta 48388221  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 42807074 - 42807113
Alignment:
Q  67 gagggttgttgaatatttgtgaccattgtaaatggtctta 106  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42807074 gagggttgttgaatatttgtgaccattgtaaatggtctta 42807113  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 30648187 - 30648226
Alignment:
Q  67 gagggttgttgaatatttgtgaccattgtaaatggtctta 106  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  30648187 gagggttgttgaatgtttgtgaccattgtaaatggtctta 30648226  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 27407120 - 27407154
Alignment:
Q  70 ggttgttgaatatttgtgaccattgtaaatggtct 104  Q
    ||||||||||| |||||||||||||||||||||||    
T  27407120 ggttgttgaatgtttgtgaccattgtaaatggtct 27407154  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 38173553 - 38173508
Alignment:
Q  67 gagggttgttgaatatttgtgaccattgtaaatggtcttatagaaa 112  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  38173553 gagggttgttgaatatttgtgaccattgtaaatggtcataaagaaa 38173508  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 13110555 - 13110522
Alignment:
Q  71 gttgttgaatatttgtgaccattgtaaatggtct 104  Q
    ||||||||||||||||||||||||||||||||||    
T  13110555 gttgttgaatatttgtgaccattgtaaatggtct 13110522  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 52017341 - 52017308
Alignment:
Q  68 agggttgttgaatatttgtgaccattgtaaatgg 101  Q
    ||||||||||||||||||||||||||||||||||    
T  52017341 agggttgttgaatatttgtgaccattgtaaatgg 52017308  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 3533384 - 3533420
Alignment:
Q  70 ggttgttgaatatttgtgaccattgtaaatggtctta 106  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3533384 ggttgttgaatatttgttaccattgtaaatggtctta 3533420  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 40302565 - 40302602
Alignment:
Q  67 gagggttgttgaatatttgtgaccattgtaaatggtct 104  Q
    |||| |||||||||||||||||||||||||||||||||    
T  40302565 gaggattgttgaatatttgtgaccattgtaaatggtct 40302602  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 103
Target Start/End: Complemental strand, 22656660 - 22656629
Alignment:
Q  72 ttgttgaatatttgtgaccattgtaaatggtc 103  Q
    ||||||||||||||||||||||||||||||||    
T  22656660 ttgttgaatatttgtgaccattgtaaatggtc 22656629  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 41183273 - 41183240
Alignment:
Q  67 gagggttgttgaatatttgtgaccattgtaaatg 100  Q
    ||||||||||||||||||||||||||||||||||    
T  41183273 gagggttgttgaatatttgtgaccattgtaaatg 41183240  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 15053624 - 15053592
Alignment:
Q  72 ttgttgaatatttgtgaccattgtaaatggtct 104  Q
    |||||||||||||||||||||||||||||||||    
T  15053624 ttgttgaatatttgtgaccattgtaaatggtct 15053592  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 57817 - 57856
Alignment:
Q  67 gagggttgttgaatatttgtgaccattgtaaatggtctta 106  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  57817 gagggttgttgaatgtttgtgaccattataaatggtctta 57856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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