View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_70 (Length: 284)
Name: NF0669_low_70
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_70 |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 284
Target Start/End: Original strand, 15800794 - 15801048
Alignment:
| Q |
30 |
gttttaagcttctaatctttcattataaatgaccttttttgtcttttgaaaaatatttattgttgcagtaatgaaagcagtgttgtgaaggaaatagttg |
129 |
Q |
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| T |
15800794 |
gttttaagcttctaatctttcattataaatgaccttttttgtcttttgaaaaatatttattgttgcagtaatgaaagcagtgttgtgaaggaaatagttg |
15800893 |
T |
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| Q |
130 |
gcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttccagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaa |
229 |
Q |
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| T |
15800894 |
gcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttccagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaa |
15800993 |
T |
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| Q |
230 |
gaatacaagaggagtttgtttagtagagatttggggaatgggagggattggcaaa |
284 |
Q |
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| T |
15800994 |
gaatacaagaggagtttgtttagtagggatttggggaatgggagggattggcaaa |
15801048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 15777014 - 15777042
Alignment:
| Q |
67 |
tttgtcttttgaaaaatatttattgttgc |
95 |
Q |
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| T |
15777014 |
tttgtcttttgaaaaatatttattgttgc |
15777042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 284
Target Start/End: Original strand, 3362036 - 3362287
Alignment:
| Q |
30 |
gttttaagcttctaatctttcattataaatgaccttttttgtcttttgaaaaatatttattgttgcagtaatgaaagcagtgttgtgaaggaaatagttg |
129 |
Q |
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| T |
3362036 |
gttttacgcttctaatccttcattttta-tgaccgtttttgttttttgtaa--tatttattgttgcagtaatgaaagcaaagttgtgaaggaaattgttt |
3362132 |
T |
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| Q |
130 |
gcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttccagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaa |
229 |
Q |
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| T |
3362133 |
cccaagttttgaaaaatctagacaataaatacttacctctgccagattttcaagttggattagaaccccgtgcggaaaagtcgattcgatttttaagaca |
3362232 |
T |
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| Q |
230 |
gaatacaagaggagtttgtttagtagagatttggggaatgggagggattggcaaa |
284 |
Q |
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| T |
3362233 |
aaatacaagaggagtttgtttagtagggatttgggggatgggggggattggcaaa |
3362287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 81 - 284
Target Start/End: Original strand, 3312711 - 3312914
Alignment:
| Q |
81 |
aatatttattgttgcagtaatgaaagcagtgttgtgaaggaaatagttggcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttc |
180 |
Q |
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| T |
3312711 |
aatatttattgttgcagtaatgaaagcaatactgtgaagcaaattgttagccaagttttgacaaaactagacaaaaaatacttacctctcccggattttc |
3312810 |
T |
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| Q |
181 |
cagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaagaatacaagaggagtttgtttagtagagatttggggaatgggagggattgg |
280 |
Q |
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| T |
3312811 |
cagttggactagaatcccgtgcggaacaatctattcggtatttaagacataattcagatggagtttgtttagtagggatttggggaatgggagggattgg |
3312910 |
T |
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| Q |
281 |
caaa |
284 |
Q |
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|||| |
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| T |
3312911 |
caaa |
3312914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 81 - 284
Target Start/End: Complemental strand, 3393799 - 3393596
Alignment:
| Q |
81 |
aatatttattgttgcagtaatgaaagcagtgttgtgaaggaaatagttggcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttc |
180 |
Q |
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||||||| ||||||||||||| |||||| |||||||||||||| ||| | ||||||||||| |||||||| |||||||| ||| | ||| |||||| |
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| T |
3393799 |
aatatttgttgttgcagtaatcaaagcaaagttgtgaaggaaattgtttctcaagttttgaaaaatctagacaaaaaatacttacctctgccaaattttc |
3393700 |
T |
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| Q |
181 |
cagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaagaatacaagaggagtttgtttagtagagatttggggaatgggagggattgg |
280 |
Q |
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||| |||||| || ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||||||||| ||||||||| ||||| |||||||| |
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| T |
3393699 |
aagttggattaaaaccccgtgcggaaaagccgattcgatttttaagacaaaatacaagaaaagtttgtttagtagggatttgggggatgggggggattgg |
3393600 |
T |
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| Q |
281 |
caaa |
284 |
Q |
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|||| |
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| T |
3393599 |
caaa |
3393596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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