View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_71 (Length: 282)

Name: NF0669_low_71
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_71
NF0669_low_71
[»] scaffold1240 (1 HSPs)
scaffold1240 (53-240)||(17-204)
[»] chr2 (10 HSPs)
chr2 (53-240)||(8854644-8854831)
chr2 (53-240)||(9073221-9073408)
chr2 (53-240)||(30819918-30820105)
chr2 (55-240)||(12857526-12857711)
chr2 (53-231)||(5145682-5145860)
chr2 (53-227)||(7585851-7586025)
chr2 (55-240)||(31185544-31185729)
chr2 (53-231)||(31205267-31205446)
chr2 (53-240)||(4278714-4278901)
chr2 (114-196)||(2779425-2779507)
[»] chr1 (14 HSPs)
chr1 (53-240)||(17785890-17786077)
chr1 (53-240)||(31470833-31471020)
chr1 (53-240)||(45241685-45241872)
chr1 (53-227)||(47297866-47298040)
chr1 (53-227)||(2475441-2475615)
chr1 (53-227)||(48385497-48385671)
chr1 (53-227)||(17676628-17676802)
chr1 (53-227)||(33166834-33167008)
chr1 (53-227)||(38837005-38837179)
chr1 (74-227)||(8470899-8471051)
chr1 (68-217)||(18318080-18318229)
chr1 (53-240)||(51522887-51523074)
chr1 (103-227)||(48407013-48407137)
chr1 (53-125)||(10265804-10265876)
[»] chr6 (9 HSPs)
chr6 (53-240)||(17958599-17958786)
chr6 (55-240)||(634317-634502)
chr6 (55-240)||(6377731-6377916)
chr6 (53-227)||(34841056-34841230)
chr6 (53-227)||(8221751-8221925)
chr6 (53-227)||(24916931-24917105)
chr6 (53-227)||(18641834-18642008)
chr6 (96-240)||(29952327-29952472)
chr6 (74-227)||(24114716-24114869)
[»] chr4 (13 HSPs)
chr4 (53-240)||(2212584-2212771)
chr4 (53-240)||(46914778-46914965)
chr4 (53-240)||(53181732-53181919)
chr4 (71-240)||(36658099-36658268)
chr4 (53-227)||(3530577-3530751)
chr4 (53-227)||(3615566-3615740)
chr4 (53-227)||(8994333-8994507)
chr4 (53-227)||(13113111-13113285)
chr4 (53-226)||(33606632-33606805)
chr4 (53-227)||(16172169-16172343)
chr4 (53-240)||(34434838-34435025)
chr4 (53-227)||(28900568-28900742)
chr4 (53-227)||(28446824-28446998)
[»] chr3 (22 HSPs)
chr3 (53-240)||(17469061-17469248)
chr3 (53-240)||(25788009-25788196)
chr3 (53-240)||(33935822-33936009)
chr3 (55-240)||(25829966-25830151)
chr3 (53-240)||(42598664-42598851)
chr3 (53-240)||(47146918-47147105)
chr3 (53-227)||(6045650-6045824)
chr3 (53-227)||(30415778-30415952)
chr3 (53-227)||(42563557-42563731)
chr3 (53-227)||(43475038-43475212)
chr3 (53-194)||(50019643-50019784)
chr3 (53-227)||(10424974-10425148)
chr3 (53-227)||(26157417-26157591)
chr3 (53-226)||(33188387-33188560)
chr3 (55-231)||(30689139-30689315)
chr3 (53-227)||(4874420-4874594)
chr3 (53-196)||(51429519-51429662)
chr3 (53-186)||(4852727-4852860)
chr3 (62-240)||(21227770-21227948)
chr3 (200-240)||(51429654-51429694)
chr3 (53-103)||(33751209-33751259)
chr3 (208-240)||(50019786-50019818)
[»] chr8 (12 HSPs)
chr8 (53-239)||(35101042-35101228)
chr8 (53-240)||(13816684-13816871)
chr8 (66-239)||(26749200-26749373)
chr8 (53-240)||(5213430-5213617)
chr8 (53-227)||(38205538-38205712)
chr8 (53-227)||(1955601-1955775)
chr8 (53-227)||(15056194-15056368)
chr8 (53-227)||(30529944-30530118)
chr8 (53-231)||(17744217-17744395)
chr8 (158-240)||(5735767-5735849)
chr8 (53-124)||(1633962-1634033)
chr8 (198-236)||(27392271-27392309)
[»] chr7 (7 HSPs)
chr7 (55-240)||(22193863-22194048)
chr7 (53-227)||(36521076-36521250)
chr7 (53-227)||(32127561-32127735)
chr7 (53-225)||(22659494-22659666)
chr7 (53-227)||(26814712-26814886)
chr7 (134-227)||(40301220-40301313)
chr7 (133-231)||(1940162-1940259)
[»] chr5 (9 HSPs)
chr5 (79-240)||(31012330-31012491)
chr5 (53-227)||(32973672-32973846)
chr5 (53-227)||(27945201-27945375)
chr5 (53-227)||(40891371-40891545)
chr5 (53-227)||(30646179-30646353)
chr5 (53-240)||(4579654-4579829)
chr5 (53-227)||(29616839-29617013)
chr5 (53-129)||(34710648-34710724)
chr5 (193-240)||(21365263-21365310)
[»] scaffold0004 (1 HSPs)
scaffold0004 (53-227)||(105423-105597)
[»] scaffold0021 (1 HSPs)
scaffold0021 (68-227)||(110521-110680)
[»] scaffold0007 (1 HSPs)
scaffold0007 (62-196)||(166670-166804)
[»] scaffold0658 (1 HSPs)
scaffold0658 (61-117)||(6549-6605)


Alignment Details
Target: scaffold1240 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 204 - 17
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  204 acatcatcttccgaccaaccgcttccttgcaaacgcttagtgctttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 105  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  104 ggcatgcaactagatcgcggagagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 17  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 8854644 - 8854831
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  8854644 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttactcatataattaaaacggtttc 8854743  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8854744 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 8854831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 9073408 - 9073221
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  9073408 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 9073309  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9073308 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 9073221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 30820105 - 30819918
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  30820105 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 30820006  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30820005 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 30819918  T

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Target: chr2; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 55 - 240
Target Start/End: Original strand, 12857526 - 12857711
Alignment:
Q  55 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 154  Q
    |||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  12857526 atcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcgg 12857625  T
Q  155 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12857626 caggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 12857711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 5145860 - 5145682
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  5145860 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgctttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 5145761  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttc 231  Q
    |||| |||| || ||| || |||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  5145760 ggcaagcaattacatcacgcggaggatcaaatgagcaatgctcattacaatactcagcaattttaccccaatatgtttc 5145682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 7586025 - 7585851
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  7586025 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 7585926  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  7585925 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 7585851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 31185729 - 31185544
Alignment:
Q  55 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 154  Q
    |||||||||||| ||||||||||||||||||| ||| |||   |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||    
T  31185729 atcatcttccgaccaaccgcttccttgcaaacgcttagcggcatcataagcactaatccatttatttattactttgctcatataattaaaacggttttgg 31185630  T
Q  155 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||||||||||||| || |||||||| ||||||| ||||||| ||||||||||| |||||||| ||||||||||||| || |||||    
T  31185629 catgcaactagatcccgcggagaatcaaatgagccatactcaatacaatactcatcaattttaccccaatatgtttcacccctctg 31185544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 31205446 - 31205267
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| |||   |||||||||| ||||||||||||||||||||| ||||||||||||||||  ||||    
T  31205446 acatcatcttccgaccaaccgcttccttgcaaacgcttagcggcatcataagcactaatccatttatttattactttgctcatataattaaaacagtttc 31205347  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcatta-caatactcagcaattttaacccaatatgtttc 231  Q
    |||||||||||||||| || |||||||| |||||||  ||||||||| ||||||||| |||||||| |||||||||||||    
T  31205346 ggcatgcaactagatcccgcggagaatcaaatgagccgtactcattaccaatactcatcaattttaccccaatatgtttc 31205267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 4278714 - 4278901
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||| | ||||| ||||| |||  |||||||| ||| ||||  |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||    
T  4278714 acatcagcctccgaccaaccacttatttgcaaacgcttagcgccatcataagcgccaatccatttatttagtactttgctcatataattaaaacggtttc 4278813  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    ||||||||| || ||| || | || |||||||||||||| |||||||||||||||| |||||||| ||||||||| ||| ||| ||||    
T  4278814 ggcatgcaattacatcacgcgaaggatcgaatgagcaatgctcattacaatactcaacaattttaccccaatatgcttcacctgtctg 4278901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 2779507 - 2779425
Alignment:
Q  114 atttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggggagaatcgaatgagcaatactca 196  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2779507 atttatttattactttgctcatataattaaaacggtttcggcatgcaactagatcgcggggagaatcgaatgagcaatactca 2779425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 17785890 - 17786077
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17785890 acatcatcttccgaccaaccgcttccttgcaaacgcttagtgctttcataagcaccaatccatttatttattactttgctcatataattaaaacgatttc 17785989  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  17785990 ggcatgcaactagatcgcggggataatcgaatgagcaatactcattacaatactcagcaattttaccccaatttgtttctcctctctg 17786077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 31470833 - 31471020
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  31470833 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 31470932  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31470933 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 31471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 45241685 - 45241872
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  45241685 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 45241784  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45241785 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 45241872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 47298040 - 47297866
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||  |||||||||||||||||||||||||||| ||| ||||||||||||||||  ||||    
T  47298040 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgccatcataagcaccaatccatttatttattaatttgctcatataattaaaacagtttc 47297941  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||||    
T  47297940 ggcatgcaactacatcgcgtggagaatcgaatgagcaatgctcattacaatactcagcaactttaccccaatatg 47297866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 2475615 - 2475441
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  2475615 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 2475516  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  2475515 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 2475441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 48385671 - 48385497
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  48385671 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 48385572  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  48385571 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 48385497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 17676802 - 17676628
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||| |||||||||||||| ||| | ||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  17676802 acatcatcttccgaccaactgcttccttgcaaacgcttagtgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 17676703  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||  |||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  17676702 ggcatgcaactgcatcgcgcggagaatcgaatgagcaatgctcattataatactcagcaattttaccccaatatg 17676628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 33166834 - 33167008
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||| | ||||||||||||||||||| ||| ||| ||||||||||| ||||||| |||||||||||||| | ||||||| ||||||| ||||    
T  33166834 acatcatcttcctaccaaccgcttccttgcaaacgcttagcgatttcataagcatcaatccaattatttattactttgcacatataactaaaacggtttc 33166933  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||| |||| || ||| ||  ||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33166934 ggcaagcaattacatcacgcagaggatcgaatgagcaatactcattacaatactcagcaattttaccccaatatg 33167008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 38837179 - 38837005
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    ||||||||||| ||  |||||||||||||||||| ||| ||||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||     
T  38837179 acatcatcttctgacgaaccgcttccttgcaaacgcttagcgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttt 38837080  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||| ||  |||||| ||||||| ||||||||||| |||||||||||||||||||||||||  ||||||||    
T  38837079 ggcatgcagctgcatcgcgcggagaattgaatgagcaatgctcattacaatactcagcaattttacaccaatatg 38837005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 8470899 - 8471051
Alignment:
Q  74 cttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggg 173  Q
    ||||||||||||| ||| ||||  || ||||||| || |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||  ||||| |    
T  8470899 cttccttgcaaacgcttagcgccatcttaagcac-aacccatttatttattaatttgctcatataattaaaacggtttcggcatgcaactacttcgcgcg 8470997  T
Q  174 gagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    ||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  8470998 gagaatcgaatgagcaatactcattacaatactcagcaattatacccaaatatg 8471051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 18318229 - 18318080
Alignment:
Q  68 caaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagat 167  Q
    ||||| ||||||||||||| ||| |||| |||||||||  ||||||||||||||| || ||| ||||||||||||||||  ||||||||||||| || ||    
T  18318229 caaccacttccttgcaaacgcttagcgccttcataagcgtcaatccatttatttagtattttgctcatataattaaaacagtttcggcatgcaattacat 18318130  T
Q  168 cgcggggagaatcgaatgagcaatactcattacaatactcagcaatttta 217  Q
    |||| ||||||||||||||||||| |||||||||||||| | ||||||||    
T  18318129 cgcgcggagaatcgaatgagcaatgctcattacaatacttaacaatttta 18318080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 51522887 - 51523074
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||| | ||||| ||||| ||||||||||||| ||| |||| ||||||| | |||||||||||||||| || ||| ||||||||| ||||||| ||||    
T  51522887 acatcagcctccgaccaaccacttccttgcaaacgcttagcgccttcataaacgccaatccatttatttagtattttgctcatataaataaaacggtttc 51522986  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    ||||||||| || ||| || |||| ||||||| ||||||  ||||||||||||||| |||||||| ||||||||| ||| ||| ||||    
T  51522987 ggcatgcaattacatcacgcggaggatcgaataagcaatgatcattacaatactcatcaattttaccccaatatgcttcacctgtctg 51523074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 48407013 - 48407137
Alignment:
Q  103 agcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaa 202  Q
    |||||||| |||||||||||||| |||  |||||||||||||||| |||||||||||||||| || ||| ||||||||||||||||||| ||| ||||||    
T  48407013 agcaccaacccatttatttattaatttgttcatataattaaaacggtttcggcatgcaactacattgcgcggagaatcgaatgagcaatgctcgttacaa 48407112  T
Q  203 tactcagcaattttaacccaatatg 227  Q
    |||||| |||||||| |||||||||    
T  48407113 tactcaacaattttaccccaatatg 48407137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 10265876 - 10265804
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttatta 125  Q
    ||||||||||| || ||||||||||||||||||| ||| ||||  ||||||||||||| ||||||||||||||    
T  10265876 acatcatcttctgaccaaccgcttccttgcaaacgcttagcgccatcataagcaccaacccatttatttatta 10265804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 17958786 - 17958599
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  17958786 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 17958687  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17958686 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 17958599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 55 - 240
Target Start/End: Original strand, 634317 - 634502
Alignment:
Q  55 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 154  Q
    |||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  634317 atcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcgg 634416  T
Q  155 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  634417 caggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 634502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 6377916 - 6377731
Alignment:
Q  55 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 154  Q
    |||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  6377916 atcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcgg 6377817  T
Q  155 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6377816 caggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 6377731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 34841056 - 34841230
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  34841056 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 34841155  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  34841156 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 34841230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 8221751 - 8221925
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||| |||  ||| ||||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| || |    
T  8221751 acatcatcttccgaccaaccgcttccttgaaaatgcttagcgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggttgc 8221850  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  8221851 ggcatgcaactacatcgcgcggagaatcgaatgagcaattctcattacaatactcagcaattttaccccaatatg 8221925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 24917105 - 24916931
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||    
T  24917105 acatcatcttccgaccaaccgcttccttgcaaacgtttagcgctttcataagcaccaatccatttatttattactttgctcatataattaaaatggtttc 24917006  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||| |||| || ||| || |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  24917005 ggcaagcaattatatcacgcggaggatcgaatgagcaatgctcattgcaatactcagcaattttaccccaatatg 24916931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 18641834 - 18642008
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||| | |||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||    
T  18641834 acatcatcttccaaccaaccgcttctttgcaaacgcttagcgatttcataagcaccaatccatttatttattactttgctcatataattaaaatggtttc 18641933  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||| |||| || ||| || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  18641934 ggcaagcaattacatcacgcggaggatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 18642008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 29952472 - 29952327
Alignment:
Q  96 tttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggggagaatcgaatgagcaatactc 195  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||  ||||||||||| ||    
T  29952472 tttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttcggcatacaactagatcgcggggataattaaatgagcaatattc 29952373  T
Q  196 attacaatactcagcaattttaaccc-aatatgtttctcctctctg 240  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||||    
T  29952372 attacaatactcagcaaatttacccctaatatgtttctcctctctg 29952327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 24114716 - 24114869
Alignment:
Q  74 cttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggg 173  Q
    |||||||||||||  || || | ||||||||| ||||||||||||||   || ||| ||||||||||||||||| ||| ||||||||| || |||| | |    
T  24114716 cttccttgcaaacgtttagcaccttcataagcgccaatccatttattcggtattttgctcatataattaaaacggttttggcatgcaattacatcgagcg 24114815  T
Q  174 gagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
     ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  24114816 cagaatcgaatgagtaatgctcattacaatactcagcaattttaccccaatatg 24114869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 2212771 - 2212584
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  2212771 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 2212672  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2212671 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 2212584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 46914965 - 46914778
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  ||||    
T  46914965 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacagtttc 46914866  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46914865 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 46914778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 53181919 - 53181732
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  53181919 acatcatcttccgaccaaccgcttccttgcatacgcttagcactttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 53181820  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53181819 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 53181732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 36658099 - 36658268
Alignment:
Q  71 ccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgc 170  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |    
T  36658099 ccgcttccttgcaaacgcttaacgctttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttctgcatgcaactagatccc 36658198  T
Q  171 ggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||    
T  36658199 ggggagaatcaaatgagcaacactcattacaatactcagcaattttaccccaatatgtttttcctctctg 36658268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 3530751 - 3530577
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  3530751 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 3530652  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  3530651 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 3530577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 3615740 - 3615566
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  3615740 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 3615641  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  3615640 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 3615566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 8994333 - 8994507
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  8994333 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 8994432  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  8994433 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 8994507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 13113111 - 13113285
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  13113111 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 13113210  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  13113211 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 13113285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 33606632 - 33606805
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  33606632 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgctttcataagcaccaatccatttatttattactttgctcatataattaaaatgatttc 33606731  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatat 226  Q
    |||| |||| || ||| || |||| |||||||||| |||  ||||||||||||||| |||||||| ||||||||    
T  33606732 ggcaagcaattacatcacgcggaggatcgaatgagtaatgttcattacaatactcaacaattttaccccaatat 33606805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 16172343 - 16172169
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||  ||||||||||||| |||||||||||||| ||| ||||||| |||| | || ||||    
T  16172343 acatcatcttccgaccaaccgcttccttgcatacgcttagcgccatcataagcaccaacccatttatttattaatttgctcatattattataccggtttc 16172244  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  16172243 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 16172169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 34435025 - 34434838
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||| | ||||||||||||||||||  ||| |||||||||||| || |||||||||||||||||||||| ||||||||||||||||| ||||    
T  34435025 acatcatcttccaaccaaccgcttccttgcaaatgcttagcgctttcataaacatcaatccatttatttattactttgctcatataattaaaacggtttc 34434926  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    ||||||||| || ||| || |||| |||||||  ||||| ||||||||||||||||||||||||| ||||||||| ||| ||| ||||    
T  34434925 ggcatgcaattacatcacgcggaggatcgaatttgcaatgctcattacaatactcagcaattttaccccaatatgcttcacctgtctg 34434838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 28900568 - 28900742
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||  |||||||||||||   |||||||||||| ||| ||||||||||||||| | ||||    
T  28900568 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgccatcataagcaccaacaaatttatttattaatttgctcatataattaaaatggtttc 28900667  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| ||| |  ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  28900668 ggcatgcaactacatcacacggagaatcgaatgagcaatgctcattacaatactcaacaattttaccccaatatg 28900742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 28446824 - 28446998
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||| | ||||| ||||| ||||||||||||| ||| |||| |||||||||  ||||||||||||  | || ||| ||||||||||||||||| ||||    
T  28446824 acatcagcctccgaccaaccacttccttgcaaactcttagcgccttcataagcgtcaatccatttatacagtattttgctcatataattaaaacggtttc 28446923  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
     |||||||| || | | || |||| |||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  28446924 tgcatgcaattacaccacgtggaggatcgaatgagcaatgctcattacaatactcaacaattttaccccaatatg 28446998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 17469061 - 17469248
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  17469061 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 17469160  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17469161 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 17469248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 25788196 - 25788009
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  25788196 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 25788097  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25788096 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 25788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 33935822 - 33936009
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  33935822 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 33935921  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  33935922 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcaacaattttaccctaatatgtttctcctctctg 33936009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 25830151 - 25829966
Alignment:
Q  55 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 154  Q
    |||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  25830151 atcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcgg 25830052  T
Q  155 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25830051 caggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 25829966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 42598851 - 42598664
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  42598851 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 42598752  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42598751 agcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 42598664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 47146918 - 47147105
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  47146918 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 47147017  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47147018 ggcaggcaactagatcgcggggagaatcgaatgagctatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 47147105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 6045824 - 6045650
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  6045824 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 6045725  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  6045724 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 6045650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 30415952 - 30415778
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  30415952 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 30415853  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  30415852 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 30415778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 42563557 - 42563731
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  42563557 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 42563656  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  42563657 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 42563731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 43475038 - 43475212
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    ||||||| |||||| ||||||||||||||||||| ||| | ||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  43475038 acatcattttccgaccaaccgcttccttgcaaacgcttagtgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 43475137  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  43475138 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 43475212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 50019643 - 50019784
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    ||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  50019643 acatcatcttcagaccaaccgcttccttgcaaacgcttagcgctttcataagcaccaatccatttatttattactttgttcatataattaaaacggtttc 50019742  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatact 194  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50019743 ggcatgcaactagatcgcggggagaatcgaatgagcaatact 50019784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 10425148 - 10424974
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| |  ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  10425148 acatcatcttccgaccaaccgcttccttgcatatgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 10425049  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  10425048 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 10424974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 26157591 - 26157417
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  26157591 acatcatcttccgaccaaccgcttccttgcagacgcttagcactttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 26157492  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||| |||| || ||| || |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  26157491 ggcaagcaattatatcacgcggaggatcgaatgagcaatgctcattgcaatactcagcaattttaccccaatatg 26157417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 53 - 226
Target Start/End: Complemental strand, 33188560 - 33188387
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  33188560 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 33188461  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatat 226  Q
    |||||||||||  |||||| |||||||||||| ||||||  |||||||||||||||||||||||| ||||||||    
T  33188460 ggcatgcaactgcatcgcgcggagaatcgaattagcaatgttcattacaatactcagcaattttaccccaatat 33188387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 55 - 231
Target Start/End: Complemental strand, 30689315 - 30689139
Alignment:
Q  55 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 154  Q
    |||||||||||| ||||| ||||||||||||| ||| |||   |||||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  30689315 atcatcttccgaccaaccacttccttgcaaacgcttagcggcatcataagcaccaatccatttatttattactttgcttatataattaaaatgatttcgg 30689216  T
Q  155 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttc 231  Q
    |||||||||||||| || |||||||| ||||||| |||||||||||||||||||||||||| | |||||||| ||||    
T  30689215 catgcaactagatcccgcggagaatcaaatgagccatactcattacaatactcagcaatttcaccccaatatatttc 30689139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 4874594 - 4874420
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||| ||| ||||||||||||||||||| ||| || |  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  4874594 acatcatctttcgaccaaccgcttccttgcaaacgcttagcaccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 4874495  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||   ||||| |||||||||||||||| || |||||||||||||||| ||||||||||||||||||    
T  4874494 ggcatgcaactgagtcgcgcggagaatcgaatgagcgatgctcattacaatactcaacaattttaacccaatatg 4874420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 51429519 - 51429662
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    ||||||| |||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||  |||||||||||||||| ||||    
T  51429519 acatcattttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgttcatataattaaaacggtttc 51429618  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactca 196  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  51429619 ggcaggcaactagatcgcgtggagaatcgaatgagcaatactca 51429662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 4852860 - 4852727
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||| ||| ||||||||||||||||||| ||| || |  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  4852860 acatcatctttcgaccaaccgcttccttgcaaacgcttagcaccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 4852761  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatga 186  Q
    |||||||| ||   ||||| ||||||||||||||    
T  4852760 ggcatgcacctgagtcgcgcggagaatcgaatga 4852727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 240
Target Start/End: Original strand, 21227770 - 21227948
Alignment:
Q  62 tccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaa 161  Q
    ||||| |||||||||||||| ||||  ||   ||| |||||||| ||||||||||||  || || |||  ||||||||||| |||| ||||| |||||||    
T  21227770 tccgaccaaccgcttccttgaaaacgattaatgctatcataagcgccaatccatttacctagtattttgttcatataattataacggtttcgacatgcaa 21227869  T
Q  162 ctagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    ||  |||| | |||| ||| |||||||||| |||||||||||| ||| ||||| || ||||||||||||| ||| ||||    
T  21227870 ctccatcgtgcggaggatcaaatgagcaattctcattacaataatcaacaattctaccccaatatgtttcacctttctg 21227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 51429654 - 51429694
Alignment:
Q  200 caatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  51429654 caatactcagcaattttaccccaatatgtttctcctctctg 51429694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 33751209 - 33751259
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataa 103  Q
    ||||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  33751209 acatcatcttctgaccaaccgcttccttgcaaacgcttagcgctttcataa 33751259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 50019786 - 50019818
Alignment:
Q  208 agcaattttaacccaatatgtttctcctctctg 240  Q
    |||||||||| ||||||||||||||||||||||    
T  50019786 agcaattttaccccaatatgtttctcctctctg 50019818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 53 - 239
Target Start/End: Original strand, 35101042 - 35101228
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  35101042 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 35101141  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctct 239  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35101142 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctct 35101228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 13816684 - 13816871
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  13816684 acatcatcttccgaccaaccgcttccttgcattcgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 13816783  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  13816784 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttacccaaatatgtttctcctctctg 13816871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 26749373 - 26749200
Alignment:
Q  66 atcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactag 165  Q
    ||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  26749373 atcaatcgcttccttgcaaacgtttagcgctttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttcggcatgcaactag 26749274  T
Q  166 atcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  26749273 atcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttacaccaatatgtttctcctctct 26749200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 5213430 - 5213617
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    ||||||| |||||| ||||||||| |||||| || ||| |||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  5213430 acatcattttccgaccaaccgcttacttgcatacgcttagcgctttcataagccccaatccatttatttattattttgctcgtataattaaaacggtttc 5213529  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5213530 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 5213617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 38205712 - 38205538
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  38205712 acatcatcttccgatcaaccgcttccttgcaaacgcttagctttttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 38205613  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||| |||| || ||| || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  38205612 ggcaagcaattacatcacgcggaggatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 38205538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 1955775 - 1955601
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  1955775 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 1955676  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  1955675 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 1955601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 15056194 - 15056368
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  15056194 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 15056293  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||    
T  15056294 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcaacaattttaccccaatatg 15056368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 30530118 - 30529944
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    ||||||||||||||   |||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||    
T  30530118 acatcatcttccgacttaccgtttccttgcaaacgcttggcgttttcataagcaccaatccattcatttattactttgctcatataattaaaacggtttc 30530019  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||| |||| || ||| || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30530018 ggcaagcaattacatcacgcggaggatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 30529944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 17744217 - 17744395
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||| ||| ||||||||| ||| |||   ||||||||||||| |||||||||||||||||| ||||||||||||||||  ||      
T  17744217 acatcatcttccgaccaaccactttcttgcaaacgcttagcgacatcataagcaccaacccatttatttattactttgctcatataattaaaacagttct 17744316  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttc 231  Q
    ||||||||||||||||  | |||||||| ||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  17744317 ggcatgcaactagatccagtggagaatcaaatgagccatactcattacaatactcagcaattttaccctaatatgtttc 17744395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 5735767 - 5735849
Alignment:
Q  158 gcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  5735767 gcaacttgatcgcggggagaatcaaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcccctctg 5735849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 1634033 - 1633962
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttatt 124  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1634033 acatcatcttccgaccaaccgcttccttgcaaacacttagcgctttcataagcaccaatccatttatttatt 1633962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 27392271 - 27392309
Alignment:
Q  198 tacaatactcagcaattttaacccaatatgtttctcctc 236  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  27392271 tacaatactcagcaattttaccccaatatgtttcacctc 27392309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 55 - 240
Target Start/End: Original strand, 22193863 - 22194048
Alignment:
Q  55 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 154  Q
    |||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  22193863 atcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcgg 22193962  T
Q  155 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22193963 caggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 22194048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 36521076 - 36521250
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  36521076 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 36521175  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  36521176 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 36521250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 32127735 - 32127561
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| |||  | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  32127735 acatcatcttccgaccaaccgcttccttgcaaacgcttaacactttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 32127636  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||| |||| || ||| || |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  32127635 ggcaagcaattatatcacgcggaggatcgaatgagcaatgctcattgcaatactcagcaattttaccccaatatg 32127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 53 - 225
Target Start/End: Original strand, 22659494 - 22659666
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || |||  |||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  22659494 acatcatcttccgaccaaccgcttccttgcatacgcttaacgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 22659593  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaata 225  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||| |||||||| |||||||| |||||||    
T  22659594 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcattaaaatactcaacaattttaccccaata 22659666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 26814712 - 26814886
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||| |||||||||||| ||| || |||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||    
T  26814712 acatcatcttccgaccaaccgtttccttgcaaacgcttagcactttcataagcatcaatccatttatttattactttgctcatataattaaaacggtttc 26814811  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||| |||| || ||| || ||||  ||||||||||||| |||||| ||||||| |||||||||| |||||||||    
T  26814812 ggcaagcaattatatcacgcggagggtcgaatgagcaatgctcattgcaatacttagcaattttaccccaatatg 26814886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 40301313 - 40301220
Alignment:
Q  134 atataattaaaacgatttcggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| | |||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  40301313 atataattaaaatggtttcggcatgcaactacatcgcacggagaatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 40301220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 1940259 - 1940162
Alignment:
Q  133 catataattaaaacgatttcggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttc 231  Q
    ||||||||||||||| ||||| ||| |||||  |||||| |||| |||||||||  ||| |||||||| | ||||| ||||| || | |||||||||||    
T  1940259 catataattaaaacggtttcgacattcaacttcatcgcgcggaggatcgaatgataaatgctcattac-acactcaacaattctacctcaatatgtttc 1940162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 31012491 - 31012330
Alignment:
Q  79 ttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggggagaa 178  Q
    ||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  31012491 ttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcggcaggcaactagatcgcggggagaa 31012392  T
Q  179 tcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31012391 tcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 31012330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 32973846 - 32973672
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  32973846 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 32973747  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  32973746 ggcatgcaactatatcgcgcggagaatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 32973672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 27945201 - 27945375
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  27945201 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 27945300  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  27945301 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 27945375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 40891371 - 40891545
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  40891371 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 40891470  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  40891471 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 40891545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 30646353 - 30646179
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||  ||||||||||||| |||||||||||||  ||| ||||||||||||||||  ||||    
T  30646353 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgccatcataagcaccaacccatttatttattcatttgctcatataattaaaacagtttc 30646254  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30646253 ggcatgcaactacatcgagcggagaatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 30646179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 4579654 - 4579829
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  4579654 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 4579753  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    ||||  ||||||||||||||||||||||||||||            ||||||||||||||||||| ||||||||||||||||||||||    
T  4579754 ggcagacaactagatcgcggggagaatcgaatga------------acaatactcagcaattttaccccaatatgtttctcctctctg 4579829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 29617013 - 29616839
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    ||||||||||||||  ||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  29617013 acatcatcttccgacaaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 29616914  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||||||||||| |||||  |||||||||||||| |||| ||| ||||||||||||| ||||||| || ||||||    
T  29616913 ggcatgcaactacatcgcacggagaatcgaatgatcaatgctcgttacaatactcaggaattttacccaaatatg 29616839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 34710648 - 34710724
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattacttt 129  Q
    |||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||    
T  34710648 acatcatcttccgaccaaccgcttccttgcaaacgcttagcactttcataagcaccaatccatttatttattacttt 34710724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 21365263 - 21365310
Alignment:
Q  193 ctcattacaatactcagcaattttaacccaatatgtttctcctctctg 240  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  21365263 ctcattacaatactcagcaattttaccccaatatgtttcacctatctg 21365310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 105423 - 105597
Alignment:
Q  53 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 152  Q
    |||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  105423 acatcatcttccgaccaaccgcttccttgcaaacgcttagcactttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 105522  T
Q  153 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    |||| |||| || ||| || |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  105523 ggcaagcaattatatcacgcggaggatcgaatgagcaatgctcattgcaatactcagcaattttaccccaatatg 105597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 110680 - 110521
Alignment:
Q  68 caaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagat 167  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| || ||    
T  110680 caaccgcttccttgcaaaagcttagcgctttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttcggcaagcaattacat 110581  T
Q  168 cgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 227  Q
    | || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  110580 cacgcggaggatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 110521  T

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Target: scaffold0007 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 196
Target Start/End: Complemental strand, 166804 - 166670
Alignment:
Q  62 tccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaa 161  Q
    ||||| ||||||||||||||||||| ||| ||||| |||||||| ||||||||||||   |||| |    ||||||||||| |||| |||||||||||||    
T  166804 tccgaccaaccgcttccttgcaaacgcttagcgctatcataagcgccaatccatttacccattattcagttcatataattataacggtttcggcatgcaa 166705  T
Q  162 ctagatcgcggggagaatcgaatgagcaatactca 196  Q
    ||  |||||| |||| ||| ||||| |||||||||    
T  166704 ctccatcgcgcggaggatcaaatgaacaatactca 166670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 6605 - 6549
Alignment:
Q  61 ttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccattt 117  Q
    ||||||||||||| ||| |||||||  ||| |||| |||||||||||||||||||||    
T  6605 ttccgatcaaccgtttcattgcaaaagcttagcgccttcataagcaccaatccattt 6549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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