View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_72 (Length: 281)
Name: NF0669_low_72
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 3377018 - 3376870
Alignment:
| Q |
44 |
catcatcattctccatgaagctagtctttgaaggatcaacatggccattgacattaacatcaaaagacaaacttcttaattgatttggtgattgaaaagg |
143 |
Q |
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| T |
3377018 |
catcatcattctccatgaagctagtctttgaaggatcaacatggccattgacattaacatcaaaagagaaacttcttaattgatttggtgattgaaaagg |
3376919 |
T |
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| Q |
144 |
acttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcc |
192 |
Q |
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| T |
3376918 |
acttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcc |
3376870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 2372487 - 2372397
Alignment:
| Q |
95 |
cattaacatcaaaagacaaacttcttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgat |
185 |
Q |
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| T |
2372487 |
cattgacatcaaaagaaaagcttttgaagtgattcggcgatcgaaaaggactaatatcttcaagaccttccattaattcccatgtgttgat |
2372397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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