View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_74 (Length: 280)
Name: NF0669_low_74
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 54 - 244
Target Start/End: Complemental strand, 16590912 - 16590723
Alignment:
| Q |
54 |
atataaacattcaaatttcccaaaattcaaaattttcattaattaccaattacttcatcaaaactcactctaaagtttaacttcatccaaattaactata |
153 |
Q |
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| T |
16590912 |
atataaacatttaaatttcccaaaaatcaaatttttcattaattatcaattacttcatcgaaactcactctaaagtttaacttcatccaaattaactata |
16590813 |
T |
|
| Q |
154 |
aagtttaatatagaaagacttgttgaattaggacggtataaaaaattccaaaagacactttggaaaattaggttaaacttcattttcttgg |
244 |
Q |
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||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16590812 |
aagtttaatatggaaagacttgttgaattaggacggtgt-aaacattccaaaagacactttggaaaattaggttaaacttcattttattgg |
16590723 |
T |
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