View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_76 (Length: 276)
Name: NF0669_low_76
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 51022933 - 51022683
Alignment:
| Q |
21 |
acatcatcagaaacaaacccaatctttctgcaggtgtcacgcacaattttctcatagtcaaccttagccttggttgtgatctcaccaaagaccataacca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51022933 |
acatcatcagaaacaaacccaatctttctgcaggtgtcacgcacaattttctcatagtcaaccttagccttggttgtgatctcaccaaagaccataacca |
51022834 |
T |
|
| Q |
121 |
agttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaaggcaagcatctagcacagcatcagagatttgatcacaaagcttgtc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51022833 |
agttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaaggcaagcatctagcacagcatcagagatttgatcacagagcttgtc |
51022734 |
T |
|
| Q |
221 |
agggtgtccctcattcacggactcagaggtaaataggaaggtctctgctgc |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51022733 |
agggtgtccctcattcacggactcagaggtaaataggaaggtctctgctgc |
51022683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 20525993 - 20526219
Alignment:
| Q |
21 |
acatcatcagaaacaaacccaatctttctgcaggtgtcacgcacaattttctcatagtcaaccttagccttggttgtgatctcaccaaagaccataacca |
120 |
Q |
| |
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|||||||| |||||||| || || || ||||| || | ||| ||||| || || |||||||| || || || |||||||||||||||||||||||||||| |
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| T |
20525993 |
acatcatctgaaacaaaacctatgttcctgcatgttttacggacaatcttttcgtagtcaacatttgcttttgttgtgatctcaccaaagaccataacca |
20526092 |
T |
|
| Q |
121 |
agttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaaggcaagcatctagcacagcatcagagatttgatcacaaagcttgtc |
220 |
Q |
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| T |
20526093 |
tgttggtctttgtgcaagtttcacatgcaactttgctgtctggatcttgctcgaggcaagcatctagaacggcatcagagatctggtcgcaaagcttgtc |
20526192 |
T |
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| Q |
221 |
agggtgtccctcattcacggactcaga |
247 |
Q |
| |
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||||||||||| ||||| || ||||| |
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| T |
20526193 |
ggggtgtccctcgttcacagattcaga |
20526219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 262
Target Start/End: Complemental strand, 45207896 - 45207688
Alignment:
| Q |
54 |
gtgtcacgcacaattttctcatagtcaaccttagccttggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaacct |
153 |
Q |
| |
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|||||||| || || ||||||||||| || || ||||||||||| || || ||||||||||| |||| |||||||||||||||||| ||||| ||||||| |
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| T |
45207896 |
gtgtcacgaacgatcttctcatagtctacattggccttggttgttatttctccaaagaccatgaccatgttagtcttggtgcaagtctcacaggcaacct |
45207797 |
T |
|
| Q |
154 |
tgctgtctacgtcctgttcaaggcaagcatctagcacagcatcagagatttgatcacaaagcttgtcagggtgtccctcattcacggactcagaggtaaa |
253 |
Q |
| |
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||||||| ||||||||||| || ||||| ||||| ||||||||||| || || || |||||||| ||||| ||||| ||||| || ||||| ||||| |
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| T |
45207796 |
tgctgtcaggatcctgttcaagacaggcatcgagcactgcatcagagatctggtcgcacagcttgtcggggtgaccctcgttcactgattcagatgtaaa |
45207697 |
T |
|
| Q |
254 |
taggaaggt |
262 |
Q |
| |
|
||| ||||| |
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| T |
45207696 |
tagaaaggt |
45207688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 41213003 - 41212896
Alignment:
| Q |
47 |
tctgcaggtgtcacgcacaattttctcatagtcaaccttagccttggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaa |
146 |
Q |
| |
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|||||| ||||| || || ||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||||| || || || ||||| |
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| T |
41213003 |
tctgcaagtgtctcgaactattttctcatagttcacggtagccttggttgttatctcaccaaagaccataaccatgttagtctttgtacatgtctcacat |
41212904 |
T |
|
| Q |
147 |
gcaacctt |
154 |
Q |
| |
|
|||||||| |
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|
| T |
41212903 |
gcaacctt |
41212896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 27718886 - 27719022
Alignment:
| Q |
21 |
acatcatcagaaacaaacccaatctttctgcaggtgtcacgcacaattttctcatagtcaaccttagccttggttgtgatctcaccaaagaccataacca |
120 |
Q |
| |
|
|||||| |||| ||||||||||| | ||||| |||||||| || |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
27718886 |
acatcagcagacacaaacccaatactcctgcaagtgtcacgaactattttctcatagtccacctttgccttggttgtgatttcaccaaagaccataacca |
27718985 |
T |
|
| Q |
121 |
agttagtcttggtgcaagtttcacaagcaaccttgct |
157 |
Q |
| |
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|||||| || || || || || || ||||||||||| |
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| T |
27718986 |
tgttagtttttgtacaggtctcgcaggcaaccttgct |
27719022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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