View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_78 (Length: 273)
Name: NF0669_low_78
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 23134875 - 23135127
Alignment:
| Q |
1 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctt |
100 |
Q |
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| T |
23134875 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctt |
23134974 |
T |
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| Q |
101 |
taggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggc |
200 |
Q |
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| T |
23134975 |
tgggcacttgaaggatgcatcttcggacagtaatggggcgtgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggc |
23135074 |
T |
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| Q |
201 |
attgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23135075 |
attgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
23135127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 11895005 - 11894753
Alignment:
| Q |
1 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctt |
100 |
Q |
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| T |
11895005 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctt |
11894906 |
T |
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| Q |
101 |
taggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggc |
200 |
Q |
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| T |
11894905 |
tgggcacttgaaggatgcatcttcggacagtaatggggcgtgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggc |
11894806 |
T |
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| Q |
201 |
attgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11894805 |
attgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
11894753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 20282706 - 20282454
Alignment:
| Q |
1 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
20282706 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctacgatgtttcgtgtctt |
20282607 |
T |
|
| Q |
101 |
taggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggc |
200 |
Q |
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| T |
20282606 |
tgggcacttgaaggatgcatctctggacaataatggggcgtgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggc |
20282507 |
T |
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| Q |
201 |
attgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282506 |
attgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
20282454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 14655983 - 14656230
Alignment:
| Q |
8 |
gtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctttaggcac |
107 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||| | || |||||||||| ||| |||||| ||||||||||| ||||||||||| || |
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| T |
14655983 |
gtgggggcgacaacattaaagggttgacatgggagaagtcaaaaatcggctcatcagtggtgatgtcgtcatgcctgcgacgttttgtgtctttaggaac |
14656082 |
T |
|
| Q |
108 |
ttgaaggatgcatctttggacagtaatg------gggcatgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggca |
201 |
Q |
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|||| || ||| | ||||| ||||| || |||| || |||||| || ||| | || |||||| |||||||||| | |||||| ||||||||| |
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| T |
14656083 |
ttgatgggtgcgtgtttggtcagtagtggggtaagggcgtggctggttgttaggattgagtgggccagctttgtttctaatagttagactgttaagggca |
14656182 |
T |
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| Q |
202 |
ttgaacctgttattttttgttgtaacggttttttggggatttatgatg |
249 |
Q |
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||||| ||||| ||||| ||||||||||||||| |||||||||||| |
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| T |
14656183 |
ttgaatttgttaattttttatgtaacggttttttgtggatttatgatg |
14656230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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