View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_82 (Length: 267)

Name: NF0669_low_82
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_82
NF0669_low_82
[»] chr6 (4 HSPs)
chr6 (1-74)||(22063561-22063634)
chr6 (2-74)||(23520224-23520296)
chr6 (8-72)||(25966250-25966315)
chr6 (141-171)||(22063703-22063733)
[»] chr4 (7 HSPs)
chr4 (1-74)||(15349894-15349967)
chr4 (5-74)||(11498666-11498735)
chr4 (1-74)||(14687836-14687909)
chr4 (5-74)||(18290126-18290195)
chr4 (2-74)||(10628739-10628811)
chr4 (2-74)||(45241017-45241090)
chr4 (141-171)||(15350036-15350066)
[»] chr3 (4 HSPs)
chr3 (1-74)||(6812953-6813026)
chr3 (2-74)||(3247142-3247215)
chr3 (2-74)||(15023684-15023757)
chr3 (141-171)||(6812853-6812883)
[»] chr1 (4 HSPs)
chr1 (1-74)||(27044974-27045047)
chr1 (1-74)||(21786507-21786580)
chr1 (2-74)||(22627186-22627259)
chr1 (141-171)||(27044876-27044906)
[»] chr8 (5 HSPs)
chr8 (1-73)||(20000389-20000461)
chr8 (2-73)||(45562635-45562707)
chr8 (2-71)||(17618732-17618801)
chr8 (2-74)||(20041222-20041294)
chr8 (141-171)||(20000290-20000320)
[»] scaffold0222 (2 HSPs)
scaffold0222 (5-74)||(17920-17989)
scaffold0222 (141-171)||(17823-17853)
[»] chr7 (12 HSPs)
chr7 (5-74)||(12565092-12565161)
chr7 (5-73)||(14223674-14223742)
chr7 (9-73)||(542030-542097)
chr7 (2-74)||(13633721-13633794)
chr7 (2-74)||(13740401-13740474)
chr7 (1-69)||(16327806-16327874)
chr7 (2-74)||(8784244-8784317)
chr7 (2-74)||(4310711-4310783)
chr7 (5-41)||(5395275-5395311)
chr7 (141-171)||(542167-542197)
chr7 (141-171)||(14223812-14223842)
chr7 (141-171)||(16327896-16327926)
[»] scaffold0566 (2 HSPs)
scaffold0566 (1-72)||(691-762)
scaffold0566 (141-171)||(584-614)
[»] chr2 (4 HSPs)
chr2 (1-74)||(25361440-25361513)
chr2 (2-74)||(44998320-44998393)
chr2 (141-171)||(25361343-25361373)
chr2 (141-171)||(26922028-26922058)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-71)||(52597-52667)
[»] chr5 (2 HSPs)
chr5 (13-69)||(18488142-18488198)
chr5 (10-74)||(23602798-23602862)
[»] scaffold0012 (2 HSPs)
scaffold0012 (2-74)||(9486-9559)
scaffold0012 (2-74)||(13589-13662)
[»] scaffold0384 (1 HSPs)
scaffold0384 (10-73)||(15230-15293)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22063561 - 22063634
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063561 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 22063634  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 23520224 - 23520296
Alignment:
Q  2 ggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||||||||||||||||| | | |||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  23520224 ggaaaggttggtttagtgatgaggttgggtttaagtgaggtttatgagtttaatcatggatattggtgaagaa 23520296  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 25966315 - 25966250
Alignment:
Q  8 gttggtttagtgatggg-ttggggtttaagtgaggttgatgagtttaatgatggagattggtgaag 72  Q
    ||||||||||||||||| || |||||||||| ||||| ||||||| |||| |||||||||||||||    
T  25966315 gttggtttagtgatggggtttgggtttaagtcaggtttatgagttgaatggtggagattggtgaag 25966250  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 22063703 - 22063733
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  22063703 tttgattggtggtaaatgtttggaatgatga 22063733  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15349894 - 15349967
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349894 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 15349967  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 11498666 - 11498735
Alignment:
Q  5 aaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11498666 aaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 11498735  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14687836 - 14687909
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14687836 tggaaagattggcttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattagtgaagaa 14687909  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 18290195 - 18290126
Alignment:
Q  5 aaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||    
T  18290195 aaggttggtttagtgatgggttggggtttaagtgagattaacgagtttaatgatggagattggtgaagaa 18290126  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 10628811 - 10628739
Alignment:
Q  2 ggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||| ||||||||||||||||||||  ||||| ||||||||| ||||||| |||| |||||||||||||||||    
T  10628811 ggaagggttggtttagtgatgggttttggttttagtgaggtttatgagttgaatggtggagattggtgaagaa 10628739  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 45241017 - 45241090
Alignment:
Q  2 ggaaaggttggtttagtgatggg-ttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||| |||||||||||||||||| || |||||||||||||||| ||||||| ||| | ||||||||||||||||    
T  45241017 ggaagggttggtttagtgatggggtttgggtttaagtgaggtttatgagttgaataacggagattggtgaagaa 45241090  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 15350036 - 15350066
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  15350036 tttgattggtggtaaatgtttggaatgatga 15350066  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6813026 - 6812953
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6813026 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 6812953  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 3247142 - 3247215
Alignment:
Q  2 ggaaaggttggtttagtgatggg-ttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3247142 ggaaaggttggtttagtgatggggttggggtttaagtgaggtttatgagtttaatgatggagattggtgaagaa 3247215  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 15023757 - 15023684
Alignment:
Q  2 ggaaaggttggtttagtgatggg-ttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||| |||||||||||||||||| |||  |||||||||| ||| | ||||| |||||||||| |||||||||||    
T  15023757 ggaagggttggtttagtgatggggttgtagtttaagtgaagtttaagagttgaatgatggagtttggtgaagaa 15023684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 6812883 - 6812853
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  6812883 tttgattggtggtaaatgtttggaatgatga 6812853  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27045047 - 27044974
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27045047 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 27044974  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21786507 - 21786580
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  21786507 tggaaaggttggtttagtgatgggttggggcttaagtgaggttgatgagtttaatgatggggattggtgaagaa 21786580  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 22627186 - 22627259
Alignment:
Q  2 ggaaaggttggtttagtgatggg-ttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||| |||||||||||||||||| ||  ||||||||||||||| ||||||| |||| |||||||||||||||||    
T  22627186 ggaagggttggtttagtgatggggtttaggtttaagtgaggtttatgagttgaatggtggagattggtgaagaa 22627259  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 27044906 - 27044876
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  27044906 tttgattggtggtaaatgtttggaatgatga 27044876  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 20000461 - 20000389
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaaga 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20000461 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaaga 20000389  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 45562635 - 45562707
Alignment:
Q  2 ggaaaggttggtttagtgatgg-gttggggtttaagtgaggttgatgagtttaatgatggagattggtgaaga 73  Q
    |||| ||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||||||||||    
T  45562635 ggaagggttggtttagtgatggtgtttgggtttaagtgaggtttatgagttgaatgatggagattggtgaaga 45562707  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 17618801 - 17618732
Alignment:
Q  2 ggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaa 71  Q
    |||| |||||||||| ||||||| |  ||||||||||||||| ||||||| |||| ||||||||||||||    
T  17618801 ggaagggttggtttactgatggggtttggtttaagtgaggtttatgagttgaatggtggagattggtgaa 17618732  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 20041222 - 20041294
Alignment:
Q  2 ggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||| |||||||||||||||||| |  || || ||| ||||| ||||||| |||| |||||||||||||||||    
T  20041222 ggaagggttggtttagtgatggggtttggatttagtaaggtttatgagttgaatggtggagattggtgaagaa 20041294  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 20000320 - 20000290
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  20000320 tttgattggtggtaaatgtttggaatgatga 20000290  T

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Target: scaffold0222 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 17989 - 17920
Alignment:
Q  5 aaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17989 aaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 17920  T

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Target: scaffold0222; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 17853 - 17823
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  17853 tttgattggtggtaaatgtttggaatgatga 17823  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 12565161 - 12565092
Alignment:
Q  5 aaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12565161 aaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 12565092  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 14223674 - 14223742
Alignment:
Q  5 aaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaaga 73  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14223674 aaggttggtttagtgatgggttggggtttaagcgaggttgatgagtttaatgatggagattggtgaaga 14223742  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 542030 - 542097
Alignment:
Q  9 ttggtttagtgatgggttggggtttaagtgaggt---tgatgagtttaatgatggagattggtgaaga 73  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||    
T  542030 ttggtttagtgatgggttggggtttaagtgaggttgatgatgagtttaatgaaggagattggtgaaga 542097  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 13633794 - 13633721
Alignment:
Q  2 ggaaaggttggtttagtgatgg-gttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||||||||||||||||||||| ||| | ||||||||||| || ||||||| ||||||||||||||||||||||    
T  13633794 ggaaaggttggtttagtgatggtgtttgagtttaagtgagttttatgagttgaatgatggagattggtgaagaa 13633721  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 13740474 - 13740401
Alignment:
Q  2 ggaaaggttggtttagtgatgg-gttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||||||||||||||||||||| ||| | ||||||||||| || ||||||| ||||||||||||||||||||||    
T  13740474 ggaaaggttggtttagtgatggtgtttgagtttaagtgagttttatgagttgaatgatggagattggtgaagaa 13740401  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 16327806 - 16327874
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtg 69  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| || |   |||||||||||||    
T  16327806 tggaaaggttggtttagtgatgggttagggtttaagtgaggttgatgaattgatgaatggagattggtg 16327874  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 8784244 - 8784317
Alignment:
Q  2 ggaaaggttggtttagtgatggg-ttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||| |||||||||| |||||| ||||||||||||| ||||   |||||||||||||||||||||||||||||    
T  8784244 ggaaaagttggtttagcgatggggttggggtttaagtaaggtgtttgagtttaatgatggagattggtgaagaa 8784317  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 4310783 - 4310711
Alignment:
Q  2 ggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||| ||||||||||||||| |||| ||| |||||||||||| ||||||| |||| ||||||||  |||||||    
T  4310783 ggaagggttggtttagtgataggtttgggcttaagtgaggtttatgagttcaatggtggagattcatgaagaa 4310711  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 5395311 - 5395275
Alignment:
Q  5 aaggttggtttagtgatgggttggggtttaagtgagg 41  Q
    |||||||||||||||||| ||||||||||||||||||    
T  5395311 aaggttggtttagtgatgagttggggtttaagtgagg 5395275  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 542167 - 542197
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  542167 tttgattggtggtaaatgtttggaatgatga 542197  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 14223812 - 14223842
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  14223812 tttgattggtggtaaatgtttggaatgatga 14223842  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 16327896 - 16327926
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  16327896 tttgattggtggtaaatgtttggaatgatga 16327926  T

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Target: scaffold0566 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 762 - 691
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaag 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  762 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggaggttggtgaag 691  T

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Target: scaffold0566; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 614 - 584
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  614 tttgattggtggtaaatgtttggaatgatga 584  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25361513 - 25361440
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  25361513 tggaaaggttggtttagtgatgggttgaggtttaagtgaggttgatgagtttaataatggagattggtgaagaa 25361440  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 44998393 - 44998320
Alignment:
Q  2 ggaaaggttggtttagtgatgg-gttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||| ||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||| |||||||| |||||    
T  44998393 ggaagggttggtttagtgatggtgtttgggtttaagtgaggtttatgagttgaatgatgaagattggtaaagaa 44998320  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 25361373 - 25361343
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  25361373 tttgattggtggtaaatgtttggaatgatga 25361343  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 26922058 - 26922028
Alignment:
Q  141 tttgattggtggtaaatgtttggaatgatga 171  Q
    |||||||||||||||||||||||||||||||    
T  26922058 tttgattggtggtaaatgtttggaatgatga 26922028  T

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Target: scaffold0035 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 52597 - 52667
Alignment:
Q  1 tggaaaggttggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaa 71  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  52597 tggaaagtttggtttagtgatgggtcagggtttaagtgaggttgatgagtttaatgatggagattggtgaa 52667  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 18488142 - 18488198
Alignment:
Q  13 tttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtg 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18488142 tttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtg 18488198  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 23602798 - 23602862
Alignment:
Q  10 tggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||||||||||||||||  ||||| ||||||||| ||||||| |||| |||||||||||||||||    
T  23602798 tggtttagtgatgggttttggttttagtgaggtttatgagttgaatggtggagattggtgaagaa 23602862  T

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Target: scaffold0012 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 9486 - 9559
Alignment:
Q  2 ggaaaggttggtttagtgatggg-ttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||| |||||||||||||||||| || |||||||||||||||| ||||||| |||| |||||||||||||||||    
T  9486 ggaagggttggtttagtgatggggtttgggtttaagtgaggtttatgagttcaatggtggagattggtgaagaa 9559  T

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Target: scaffold0012; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 13589 - 13662
Alignment:
Q  2 ggaaaggttggtttagtgatggg-ttggggtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 74  Q
    |||| |||||||||||||||||| || |||||||||||||||| ||||||| |||| |||||||||||||||||    
T  13589 ggaagggttggtttagtgatggggtttgggtttaagtgaggtttatgagttcaatggtggagattggtgaagaa 13662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 15230 - 15293
Alignment:
Q  10 tggtttagtgatgggttggggtttaagtgaggttgatgagtttaatgatggagattggtgaaga 73  Q
    ||||||||||||||| |  ||||| ||||||||| ||||||| |||| ||||| ||||||||||    
T  15230 tggtttagtgatggggtttggttttagtgaggtttatgagttgaatggtggaggttggtgaaga 15293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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