View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_86 (Length: 263)
Name: NF0669_low_86
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_86 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 3616126 - 3615944
Alignment:
| Q |
1 |
ctcactgtcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3616126 |
ctcactgtcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttag |
3616027 |
T |
|
| Q |
101 |
aagggtcatataatgtttaaaatccatcgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
183 |
Q |
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| T |
3616026 |
aagggtcatataatgtttaaaatccattgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
3615944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 52077411 - 52077229
Alignment:
| Q |
1 |
ctcactgtcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttac |
100 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52077411 |
ctcactatcgtcgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcgtcctctttcatcgtcctttatttaatttac |
52077312 |
T |
|
| Q |
101 |
aagggtcatataatgtttaaaatccatcgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
183 |
Q |
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|||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52077311 |
aagggtcatataataattaaaatcaattgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
52077229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 16756739 - 16756909
Alignment:
| Q |
13 |
gtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttacaagggtcatata |
112 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16756739 |
gtttccttcctgcttcttcccttccttctctctgtcgagcacaaaatcatcaataacatcctctttcatcgtcctttatttaatttacaagggtcatata |
16756838 |
T |
|
| Q |
113 |
atgtttaaaatccatcgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
183 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16756839 |
atgtttaaaatccattgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
16756909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 7309513 - 7309553
Alignment:
| Q |
11 |
ccgtttcctttctgcttcttcccttccttctctctgtcgag |
51 |
Q |
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|||||||||||| |||||||| |||||||||||||||||| |
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| T |
7309513 |
ccgtttcctttcagcttcttcttttccttctctctgtcgag |
7309553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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