View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0669_low_87 (Length: 262)
Name: NF0669_low_87
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_87 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 41747720 - 41747975
Alignment:
| Q |
1 |
aacttggatacaccctacaaaatgtattgagaaatgaaactattgacaatacatgatcattgttttatttattgtataaactaaattcaattgtactttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41747720 |
aacttggatacaccctacaaaatgtattgagaaatgaaattattgacaatacatgatcattgctttatttattgtataaactaaattcaattgtactttt |
41747819 |
T |
|
| Q |
101 |
cgaattgagttcgatgaacatttaattagtctaattacttaattaccttggtgctcctcccatttttaacaaaaaatttaagatagtcgttaccagcagc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41747820 |
cgaattgagttcgatggacatttaataagtctaattacttaattaccttggtgctcctcccatttttaacaaaaaatttaagatagtcgttaccagcagc |
41747919 |
T |
|
| Q |
201 |
actgatgagagaaattgaggattgaaggtcgggtttggtatacacatattgttgga |
256 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41747920 |
actaacgagagaaattgaggattgaaggtcgggtttggtatacacattttgttgga |
41747975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 41739828 - 41739888
Alignment:
| Q |
145 |
accttggtgctcctcccatttttaacaaaaaatttaagatagtcgttaccagcagcactga |
205 |
Q |
| |
|
||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41739828 |
accttagtgctccccccgtttgtaacaaaaaatttaagatagtcgttaccagcagcgctga |
41739888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3316 times since January 2019
Visitors: 4032