View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_88 (Length: 260)

Name: NF0669_low_88
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_88
NF0669_low_88
[»] scaffold0091 (3 HSPs)
scaffold0091 (183-260)||(29057-29135)
scaffold0091 (43-120)||(28917-28994)
scaffold0091 (43-105)||(24720-24782)
[»] chr6 (4 HSPs)
chr6 (183-260)||(14989412-14989490)
chr6 (185-260)||(14980300-14980376)
chr6 (43-107)||(14980458-14980522)
chr6 (183-220)||(10906902-10906939)
[»] chr1 (4 HSPs)
chr1 (183-260)||(13882273-13882351)
chr1 (183-260)||(51658699-51658777)
chr1 (43-107)||(13882462-13882526)
chr1 (46-104)||(51658854-51658912)
[»] scaffold0218 (2 HSPs)
scaffold0218 (184-260)||(14378-14455)
scaffold0218 (43-120)||(14237-14314)
[»] scaffold0003 (2 HSPs)
scaffold0003 (183-257)||(130795-130870)
scaffold0003 (43-107)||(130633-130697)
[»] chr3 (9 HSPs)
chr3 (186-260)||(16642300-16642375)
chr3 (185-260)||(4712837-4712913)
chr3 (183-260)||(14055074-14055152)
chr3 (183-260)||(14062815-14062893)
chr3 (43-107)||(16642133-16642197)
chr3 (43-107)||(4712995-4713059)
chr3 (43-107)||(14062981-14063045)
chr3 (43-106)||(14055221-14055284)
chr3 (187-250)||(13926896-13926960)
[»] chr7 (8 HSPs)
chr7 (183-260)||(16060512-16060590)
chr7 (183-260)||(48376787-48376865)
chr7 (43-120)||(16060374-16060449)
chr7 (43-106)||(9080206-9080269)
chr7 (43-95)||(16069015-16069067)
chr7 (43-95)||(48376637-48376689)
chr7 (183-220)||(9080338-9080375)
chr7 (183-215)||(37946032-37946064)
[»] scaffold0063 (2 HSPs)
scaffold0063 (43-120)||(28443-28518)
scaffold0063 (183-221)||(28342-28380)
[»] chr8 (5 HSPs)
chr8 (183-245)||(23657751-23657814)
chr8 (43-94)||(23657648-23657699)
chr8 (183-230)||(23658526-23658573)
chr8 (43-94)||(23658423-23658474)
chr8 (43-95)||(17862251-17862303)
[»] scaffold1269 (1 HSPs)
scaffold1269 (206-260)||(1-56)
[»] scaffold0061 (1 HSPs)
scaffold0061 (48-107)||(18097-18156)
[»] scaffold1043 (1 HSPs)
scaffold1043 (43-95)||(1432-1484)
[»] chr5 (3 HSPs)
chr5 (43-95)||(25756788-25756840)
chr5 (43-95)||(25790961-25791013)
chr5 (46-90)||(24832209-24832253)
[»] chr4 (1 HSPs)
chr4 (43-90)||(19728457-19728504)
[»] chr2 (2 HSPs)
chr2 (44-95)||(23907788-23907839)
chr2 (183-250)||(23656508-23656576)


Alignment Details
Target: scaffold0091 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 29057 - 29135
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatca 29135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 28917 - 28994
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 120  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  28917 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 24720 - 24782
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatat 105  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  24720 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 14989490 - 14989412
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatca 14989412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 14980376 - 14980300
Alignment:
Q  185 catcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatca 14980300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 14980522 - 14980458
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 107  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  14980522 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 14980458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcat 220  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 13882351 - 13882273
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatca 13882273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 51658777 - 51658699
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatca 51658699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 13882526 - 13882462
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 107  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||  ||| |||||||    
T  13882526 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatatat 13882462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 51658912 - 51658854
Alignment:
Q  46 atcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtata 104  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||| ||| ||||    
T  51658912 atcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 14378 - 14455
Alignment:
Q  184 tcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatca 14455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 14237 - 14314
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 120  Q
    |||| ||||||  |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||  |||||||||||    
T  14237 gacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacacaccaccc 14314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtca 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 130633 - 130697
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 107  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  130633 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 130697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 16642300 - 16642375
Alignment:
Q  186 atcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatca 16642375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 4712913 - 4712837
Alignment:
Q  185 catcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatca 4712837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 14055152 - 14055074
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatca 14055074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 14062893 - 14062815
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatca 14062815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 16642133 - 16642197
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 107  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  16642133 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 16642197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 4713059 - 4712995
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 107  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  4713059 gacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatatat 4712995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 14063045 - 14062981
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 107  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||    
T  14063045 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatatat 14062981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 14055284 - 14055221
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatata 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||| ||||||    
T  14055284 gacatcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatata 14055221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 13926960 - 13926896
Alignment:
Q  187 tcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatc 250  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||| || |||||||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatc 13926896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 16060512 - 16060590
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatca 16060590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 48376787 - 48376865
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatca 48376865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 16060374 - 16060449
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 120  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||  || ||||||||||||||||||||    
T  16060374 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 9080206 - 9080269
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatata 106  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||    
T  9080206 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatata 9080269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 16069067 - 16069015
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 95  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  16069067 gacatcatcattcaaatcatcatcataattatacgtcatcattctcatcgtca 16069015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 48376637 - 48376689
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 95  Q
    |||| ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  48376637 gacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtca 48376689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcat 220  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 37946064 - 37946032
Alignment:
Q  183 ctcatcatcactaacatataaacattatcattt 215  Q
    |||||||||||||| ||||||||||||||||||    
T  37946064 ctcatcatcactaaaatataaacattatcattt 37946032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 28518 - 28443
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 120  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||||  || ||||||||||||||||||||    
T  28518 gacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 28443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatc 221  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 23657751 - 23657814
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatata 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 23657648 - 23657699
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtc 94  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  23657648 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtc 23657699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 23658526 - 23658573
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtatttatt 230  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatt 23658573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 23658423 - 23658474
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtc 94  Q
    |||| |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  23658423 gacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtc 23658474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 17862303 - 17862251
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 95  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||| ||||    
T  17862303 gacatcatcattcaaatcatcatcataattataccttatcattctcatcgtca 17862251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 1 - 56
Alignment:
Q  206 attatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtcatca 260  Q
    ||||||||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatca 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 18156 - 18097
Alignment:
Q  48 catcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 107  Q
    |||||||||||||||||||||||| |||| || ||||||||||||||| ||| |||||||    
T  18156 catcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatatat 18097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 1484 - 1432
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 95  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||| ||||    
T  1484 gacatcatcattcaaatcatcatcataattatacgttatcattctcatcgtca 1432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 25756840 - 25756788
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 95  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||    
T  25756840 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtca 25756788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 25790961 - 25791013
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 95  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||    
T  25790961 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtca 25791013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 24832253 - 24832209
Alignment:
Q  46 atcatcattcaagtcatcatcataattatacgtcttcattctcat 90  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  24832253 atcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 19728504 - 19728457
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcttcattctcat 90  Q
    ||||||||||||||| |||||||||||||||||| |  ||||||||||    
T  19728504 gacatcatcattcaaatcatcatcataattatactttatcattctcat 19728457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 23907788 - 23907839
Alignment:
Q  44 acatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 95  Q
    |||||||||||||| | |||||||||| |||||||| |||||||||| ||||    
T  23907788 acatcatcattcaaattatcatcataaatatacgtcatcattctcatcgtca 23907839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 23656576 - 23656508
Alignment:
Q  183 ctcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatc 250  Q
    ||||| |||| ||| ||||||| ||||||||||||||| ||||||| ||| || ||| |||||||||||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatc 23656508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3529 times since January 2019
Visitors: 4036